Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g1304 ATGTCTAACGCTGCAAAAGTTTTGGATCCAGCATTCCAGGGAGTAGGCCAAAGAGTAGGGACTGAAATATGGAGAATTGAGAATTTTCAGCCAGTTCCATTGCCCAAATCTGAACATGGGAAATTCTACATGGGAGATTCTTACATCATCTTACAGACAACACAAGGCAAAGGGGGCAGTTATCTTTTTGATATTCACTTCTGGATTGGCAAGGATACAAGTCAGGATGAAGCTGGCACTGCAGCCATTAAAACTGTTGAACTTGATGCATCTCTTGGAGGACGTGCTGTTCAGCACAGGGAAATCCAAGGGCATGAATCTGACAAGTTTTTGTCATACTTTAAGCCATGTATTATACCATTAGAGGGGGGTGTCGCCTCTGGTTTTAAAACACCTGAAGAAGAGGAGTTTGAAACACGTTTGTATGTATGCAAGGGAAAACGAGTTGTCAGAATAAAACAGGTCCCTTTCGCACGGTCTTCACTGAATCACGATGATGTATTCATCCTAGATACTCAGGATAAGATTTACCAATTCAATGGTGCAAATTCCAATATTCAGGAAAGAGCCAAGGCCTTGGAAGTTATTCAGTTATTGAAGGAAAAGTATCATGAAGGGAAATGCGACGTTGCAATTGTTGATGATGGCAAGTTGGATACTGAGTCAGACTCAGGTGAATTTTGGGTCCTCTTTGGTGGTTTTGCTCCCATTGGTAAGAAGGTAATCAGTGAGGATGATATTGTTCCAGAGACCATTCCTGCTCAACTTTATAGTATTGCTGATGGTGATGTCAAGTCTGTGGAAGGTGAACTTTCTAAGTCACTACTGGAGAACAGCAAATGCTATTTACTGGACTGTGGTGCTGAGGTATATGTCTGGGTTGGCCGGGTAACACAAGTTGAAGAACGAAAAGCAGCTTGTCAAGCAGCTGAGGACTATGTTGCAAGTCAAAAAAGGCCAAAGTCTACAAGGATAACCCGGGTTATCCAAGGTTATGAGCCACATTCATTTAAGTCCAACTTTGATTCTTGGCCATCAGGATCTGCTACTACCGGTGCTGAGGAAGGAAGAGGAAAAGTTGCAGCTATGCTGAAGCAACAAGGTATGGGACTCAAAGGAGTGGCAAAAAGTGCCCCAGTTAATGAGGAAGTTCCACCATTGCTTGAAGGAGGTGGAAAAATGGAGGTATGGCTAATCAATGGAAGTGCTAAGACTCCATTACCTAAAGAGGATATTGGTAAATTTTATAGTGGAGATTGTTACATAGTACTGTACACTTATCACTCCGGCGAGAGGAAGGAAGACTACTTCTTGTGCTGTTGGTTTGGCAAAAACAGCATTGAGGAGGACCAAAAAATGGCTACTCGGTTGGCTAATACAATGTTCAACTCATTAAAGGGTAGACCTGTTCAGGGTCGCATATTTGAAGGTAAAGAGCCACCTCAGTTTGTTGCTATTTTCCAACCTATGGTGATCCTCAAGGGAGGTTTGAGCTCTGGTTACAAAAAATTAATAGCAGATAAAGGTTTGCCAGATGAGACATACACAGCAGAGAGTATTGCACTTATTCGTATTTCCGGAACATCCATTCATAATAATAAAGCAGTGCAAGTTGATGCAGTGGCGGCATCATTGAATTCTACTGAGTGTTTTCTCTTACAATCTGGCTCAACAGTTTTCACTTGGCATGGCAATCAAAGTTCCTTTGAGCAGCAGCAGCTTGCGGCAAAAGTTGCTGAGTTTTTAAGGCCAGGAATTGCTTTAAAGCATGCAAAAGAAGGGACAGAAACCTCCGCATTCTGGTTTGCTGTTGGAGGAAAACAAAGTCACACCAGCAAAAAAGCCACTAATGACATTGTCAGAGACCCACATTTATTCACTTTCTCATTTAATAGAGGAAAGTTACAGGAAGAGGAGGTTTACAACTTTTCCCAGGATGATTTGTTAACAGAGGACATCCTAATACTTGACACGCATGCTGAAGTGTTTGTTTGGATCGGTCAGTCTGTGGACACTAAAGAAAAGCAAAATGCTTTTGAAATTGCCCAGAAATACATTGATAAGGCTACATCTCTGGAAGGGCTTTCTCCTCATGTACCTCTGTATAAAGTAACAGAAGGGAATGAACCTTGCTTTTTCACAACATACTTTTCTTGGGATCATGCAAAAGCTACGGTTCAGGGGAACTCATTCCAGAAAAAGGTGGCATTATTCTTTGGGTTTGGCCATTCTGTTGAGGAAAAGACTAAAGGACCAAGTCAAGGGGGACCAAGACAAAGAGCAGAAGCTTTGGCTGCCTTAACTAATGCGTTCAATTCATCTCCTGAGTCACCATCCAGTGCGGATAAATTGAATGGCTTTAATCAAGGAGGACCTAGACAAAGGGCAGAAGCTTTAGCCGCCTTAAACTCCGCATTTAATTCAACATCCGGAACTAAACCTATTACTCCTAGGTCATCAGCAAGAGGTCAAGGATCACAACGAGCAGCAGCTGTAGCTGCTCTATCTCAAGTTCTCACTGCTGAAAAAAAGAAACATTCACCTGACACGTCTCCGATGGCAAGCAGTAGTCCTGTTGTGGGAAGTAGCACTCCTGCTGATGCTAAAAGTGAAAGTGCCCATTCTGAAGAAGCTCTTGAAGAAGAAGCCAAGGAGAGAGAGGAACTTGCCCCTGAAACAGGTAGCAATGGGGATTCAGAACCGAAACAGGAAAATGTGGAGGATGAAAATGATAGTCAAAATAGTCAGAGATTCTTCAGTTATGAGAAATTAAAGGCTAAATCTGAGTTGTCTGGAGTTGATCTTAAACGGAGAGAGGCCTATCTGTCAGAAAAAGAATTCGAAACTGTATTTGGAATGACAAAAGAAGCATTCTCGAAGTTACCAAGATGGAAGCAAGACATGCTGAAAAGGAAAGTTGATTTGTTCTAG 2931 0.4224 MSNAAKVLDPAFQGVGQRVGTEIWRIENFQPVPLPKSEHGKFYMGDSYIILQTTQGKGGSYLFDIHFWIGKDTSQDEAGTAAIKTVELDASLGGRAVQHREIQGHESDKFLSYFKPCIIPLEGGVASGFKTPEEEEFETRLYVCKGKRVVRIKQVPFARSSLNHDDVFILDTQDKIYQFNGANSNIQERAKALEVIQLLKEKYHEGKCDVAIVDDGKLDTESDSGEFWVLFGGFAPIGKKVISEDDIVPETIPAQLYSIADGDVKSVEGELSKSLLENSKCYLLDCGAEVYVWVGRVTQVEERKAACQAAEDYVASQKRPKSTRITRVIQGYEPHSFKSNFDSWPSGSATTGAEEGRGKVAAMLKQQGMGLKGVAKSAPVNEEVPPLLEGGGKMEVWLINGSAKTPLPKEDIGKFYSGDCYIVLYTYHSGERKEDYFLCCWFGKNSIEEDQKMATRLANTMFNSLKGRPVQGRIFEGKEPPQFVAIFQPMVILKGGLSSGYKKLIADKGLPDETYTAESIALIRISGTSIHNNKAVQVDAVAASLNSTECFLLQSGSTVFTWHGNQSSFEQQQLAAKVAEFLRPGIALKHAKEGTETSAFWFAVGGKQSHTSKKATNDIVRDPHLFTFSFNRGKLQEEEVYNFSQDDLLTEDILILDTHAEVFVWIGQSVDTKEKQNAFEIAQKYIDKATSLEGLSPHVPLYKVTEGNEPCFFTTYFSWDHAKATVQGNSFQKKVALFFGFGHSVEEKTKGPSQGGPRQRAEALAALTNAFNSSPESPSSADKLNGFNQGGPRQRAEALAALNSAFNSTSGTKPITPRSSARGQGSQRAAAVAALSQVLTAEKKKHSPDTSPMASSSPVVGSSTPADAKSESAHSEEALEEEAKEREELAPETGSNGDSEPKQENVEDENDSQNSQRFFSYEKLKAKSELSGVDLKRREAYLSEKEFETVFGMTKEAFSKLPRWKQDMLKRKVDLF* 977
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g1304 976 SUPERFAMILY Actin depolymerizing proteins 129 237 - -
Lja1g1304 976 Gene3D Severin 388 521 IPR029006 -
Lja1g1304 976 Pfam Gelsolin repeat 267 337 IPR007123 -
Lja1g1304 976 Pfam Gelsolin repeat 532 583 IPR007123 -
Lja1g1304 976 Pfam Gelsolin repeat 405 483 IPR007123 -
Lja1g1304 976 Pfam Gelsolin repeat 637 713 IPR007123 -
Lja1g1304 976 Pfam Gelsolin repeat 150 217 IPR007123 -
Lja1g1304 976 Pfam Gelsolin repeat 29 111 IPR007123 -
Lja1g1304 976 SMART VILL_6 392 490 IPR007122 GO:0051015
Lja1g1304 976 SMART VILL_6 137 234 IPR007122 GO:0051015
Lja1g1304 976 SMART VILL_6 251 344 IPR007122 GO:0051015
Lja1g1304 976 SMART VILL_6 623 719 IPR007122 GO:0051015
Lja1g1304 976 SMART VILL_6 518 607 IPR007122 GO:0051015
Lja1g1304 976 SMART VILL_6 19 117 IPR007122 GO:0051015
Lja1g1304 976 CDD gelsolin_S3_like 268 343 - -
Lja1g1304 976 MobiDBLite consensus disorder prediction 771 787 - -
Lja1g1304 976 Gene3D Severin 5 132 IPR029006 -
Lja1g1304 976 Gene3D Severin 133 246 IPR029006 -
Lja1g1304 976 SMART VHP_1 941 976 IPR003128 GO:0003779|GO:0007010
Lja1g1304 976 CDD gelsolin_S4_like 386 487 - -
Lja1g1304 976 Gene3D Severin 522 613 IPR029006 -
Lja1g1304 976 SUPERFAMILY Actin depolymerizing proteins 596 718 - -
Lja1g1304 976 PANTHER VILLIN 1 976 IPR007122 GO:0051015
Lja1g1304 976 SUPERFAMILY Actin depolymerizing proteins 383 528 - -
Lja1g1304 976 SUPERFAMILY Actin depolymerizing proteins 9 147 - -
Lja1g1304 976 CDD gelsolin_S5_like 519 609 - -
Lja1g1304 976 ProSiteProfiles Headpiece (HP) domain profile. 913 976 IPR003128 GO:0003779|GO:0007010
Lja1g1304 976 MobiDBLite consensus disorder prediction 807 833 - -
Lja1g1304 976 Pfam Villin headpiece domain 941 976 IPR003128 GO:0003779|GO:0007010
Lja1g1304 976 MobiDBLite consensus disorder prediction 870 893 - -
Lja1g1304 976 SUPERFAMILY VHP, Villin headpiece domain 912 976 IPR036886 GO:0003779|GO:0007010
Lja1g1304 976 SUPERFAMILY Actin depolymerizing proteins 510 612 - -
Lja1g1304 976 CDD gelsolin_S6_like 622 720 - -
Lja1g1304 976 CDD gelsolin_S1_like 12 124 - -
Lja1g1304 976 Gene3D Severin 247 356 IPR029006 -
Lja1g1304 976 PANTHER VILLIN-3-LIKE ISOFORM X1 1 976 - -
Lja1g1304 976 MobiDBLite consensus disorder prediction 850 869 - -
Lja1g1304 976 CDD gelsolin_S2_like 138 232 - -
Lja1g1304 976 PRINTS Gelsolin family signature 323 344 IPR007122 GO:0051015
Lja1g1304 976 PRINTS Gelsolin family signature 411 427 IPR007122 GO:0051015
Lja1g1304 976 PRINTS Gelsolin family signature 645 667 IPR007122 GO:0051015
Lja1g1304 976 PRINTS Gelsolin family signature 533 553 IPR007122 GO:0051015
Lja1g1304 976 PRINTS Gelsolin family signature 593 612 IPR007122 GO:0051015
Lja1g1304 976 PRINTS Gelsolin family signature 437 455 IPR007122 GO:0051015
Lja1g1304 976 PRINTS Gelsolin family signature 470 490 IPR007122 GO:0051015
Lja1g1304 976 PRINTS Gelsolin family signature 674 693 IPR007122 GO:0051015
Lja1g1304 976 MobiDBLite consensus disorder prediction 771 793 - -
Lja1g1304 976 MobiDBLite consensus disorder prediction 807 920 - -
Lja1g1304 976 Gene3D Villin headpiece domain 900 976 IPR036886 GO:0003779|GO:0007010
Lja1g1304 976 SUPERFAMILY Actin depolymerizing proteins 223 345 - -
Lja1g1304 976 Gene3D Severin 616 736 IPR029006 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g1304 Lja-Chr1 13594012 13603321 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g1304 - - gmx:100787208 1671.75
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g1304 1 13594012 13603321 Lja5g2217 5 36813764 36835438 PCT