Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g2125 ATGTCCGGCAACAAGGTGAAGGGCCTTCTTAAAGGCCTAAGATACATATCTCAGATATTTGAAAATGATAAAGACCAAGATATACAAATTGGATACCCTACAGATGTAAAGCATGTGGCCCATATAGGATGGGATGGGCCTTCTGTAAATACTCCCAGCTGGATGAACGAATATAAAAGTTCTCCAGGATTTGCATCAGCACCCTTAAATCTAAATGGGGATGCTCAAAATAAAGGACAAGATAACTCAGTCAAATGGATCTCCGAAGATTTGCCAAAAGGATCTAGAAGGCAATCAACAGGTAACATGACAGATTCTCCCTCAAGGGAAAAATCAAGGCAATCAAAAAAATCATCCCACAAATCATCATCACTCAACAAGGAGCCCCAAGGAGAAGGGTCACCAGCACCAGACATTCCCAAGAAAACTCGTAGAAAGAAGTCAAAAGAAAACTCTGGTAGTGGTGGTGGGTCATCCAAGTCAAGATCCAAAGGAGCTCAACACCAAGATCCAAGTCAGGATTATGGATCTGCATCTCAACCTGTATCTGAGTCTAGAATTAGTTAG 567 0.4162 MSGNKVKGLLKGLRYISQIFENDKDQDIQIGYPTDVKHVAHIGWDGPSVNTPSWMNEYKSSPGFASAPLNLNGDAQNKGQDNSVKWISEDLPKGSRRQSTGNMTDSPSREKSRQSKKSSHKSSSLNKEPQGEGSPAPDIPKKTRRKKSKENSGSGGGSSKSRSKGAQHQDPSQDYGSASQPVSESRIS* 189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g2125 188 Pfam P21-Rho-binding domain 29 81 IPR000095 -
Lja5g2125 188 Gene3D CRIB domain 24 61 IPR036936 -
Lja5g2125 188 PANTHER CRIB DOMAIN-CONTAINING PROTEIN RIC8 4 172 IPR044510 -
Lja5g2125 188 MobiDBLite consensus disorder prediction 61 84 - -
Lja5g2125 188 CDD CRIB 28 61 - -
Lja5g2125 188 SMART PBD_5 30 61 IPR000095 -
Lja5g2125 188 MobiDBLite consensus disorder prediction 152 188 - -
Lja5g2125 188 MobiDBLite consensus disorder prediction 61 188 - -
Lja5g2125 188 ProSiteProfiles CRIB domain profile. 30 43 IPR000095 -
Lja5g2125 188 MobiDBLite consensus disorder prediction 93 108 - -
Lja5g2125 188 PANTHER CRIB DOMAIN-CONTAINING PROTEIN RIC8 4 172 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g2125 Lja-Chr5 29011229 29012800 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g2125 - - cam:101503176 194.897
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g1015 1 10086497 10090107 Lja5g2125 5 29011229 29012800 PCT