Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g1015 ATGGCAACCGACAATAAGGTGAAGAGCCTCCTTAGAGGCCTAAGATTCATTTCTCGGATATTTGATAATAGTGAAAAAGAGCCAGAAATTGAGATTGGTAATCCCACAGATGTAAGGCATGTGGCACATATTGGATTGGATAATCGTGGTCCCACTGAAAACTCTCCCAGCTGGATGAACGAGTTTAAATCTGTCCCAGGAATTTCATCTGCACCTGAAAATCACGATGGTGACAATAATTGCAAAGGGTCTGAGAATTCAAGCAAGGTCTCTGCAGATTCAAGGTCTATGAATTCTCAAGGTCAAGAGAAAGACTCAACTGAGTTGCCTAAAACATCTAGGCGGCACTCAAATTCCAAAATGAACATAATAGAGTCCCAAGCAAAGGAAAAATCAGATAGGCCAAAGCATACAAAAAGGTCATCCAAACATTCACAACCCAATAGTGATTCAGATTATATCCAACTCCAAGGTAGTGGGGAATTGCCACCTACAGGCCTGCCAGAAAGCCCAAAAAAGGGTCGATCAAAGAAGACCAAAGATGCTTCCGGTGGTGGTGACTCGTCCAAAACGAGATCAAAACCCCATTCTAGGGAGCTCAACTCCAATGAAGGGTCTCATTCTAGATCAAGTTCCAAATCTAGGAACAAAAATAGGGCTAATGAAGAAGATGAACAAGTTGAGAGAAGCAACATGAATTCAATGCAGACAAACCAATAA 720 0.4181 MATDNKVKSLLRGLRFISRIFDNSEKEPEIEIGNPTDVRHVAHIGLDNRGPTENSPSWMNEFKSVPGISSAPENHDGDNNCKGSENSSKVSADSRSMNSQGQEKDSTELPKTSRRHSNSKMNIIESQAKEKSDRPKHTKRSSKHSQPNSDSDYIQLQGSGELPPTGLPESPKKGRSKKTKDASGGGDSSKTRSKPHSRELNSNEGSHSRSSSKSRNKNRANEEDEQVERSNMNSMQTNQ* 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g1015 239 CDD CRIB 30 64 - -
Lja1g1015 239 Pfam P21-Rho-binding domain 31 74 IPR000095 -
Lja1g1015 239 PANTHER CRIB DOMAIN-CONTAINING PROTEIN RIC7-LIKE ISOFORM X1 7 198 - -
Lja1g1015 239 MobiDBLite consensus disorder prediction 43 239 - -
Lja1g1015 239 ProSiteProfiles CRIB domain profile. 32 45 IPR000095 -
Lja1g1015 239 Gene3D CRIB domain 28 76 IPR036936 -
Lja1g1015 239 MobiDBLite consensus disorder prediction 171 203 - -
Lja1g1015 239 MobiDBLite consensus disorder prediction 215 229 - -
Lja1g1015 239 PANTHER CRIB DOMAIN-CONTAINING PROTEIN RIC8 7 198 IPR044510 -
Lja1g1015 239 MobiDBLite consensus disorder prediction 73 106 - -
Lja1g1015 239 MobiDBLite consensus disorder prediction 50 64 - -
Lja1g1015 239 SMART PBD_5 32 65 IPR000095 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g1015 Lja-Chr1 10086497 10090107 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g1015 - - gmx:102666244 196.823
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g1015 1 10086497 10090107 Lja5g2125 5 29011229 29012800 PCT