Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g2112 ATGATCAGAAAACGTTACCACATTCCCTTTCTTTTTCTCTTCACTGTTTCCAGGCTCCTTCTTCTGCACCCTATGTCTGATGAAGATAACAGCACAAAGTTGGTTTACAAGGACTGTGCAGAACAGAAACTGCATGACCCATCAGGGATTTTCTCACAGAACCTCAAAGCCCTCTTGGCTTCTCTAGTGGAGCTATCTGGACAAAAGGCCTTCTCCACCACAACCTCCGGTTCCGGCGAGAATGTGATCATGGGCATGTTCCAATGCAGAGGAGACCTCTCGAACCCTGCATGCTGCAGCTGTGTCAGCAAGATTTCTGATATGCTGGAGCGTGGAGAGCTCTGTAGCAATCTGGCTGCGGCTGCGCGGGTTCAGCTTAGCGAGTGCTACCTGAGATACGAGGTGGTGGGGTTCGAGCAGGTACCAGAGACTCTACTGCTTTACAAGGTTTGCGGGCCAAAGCAGGTGAATGGTATTGATGGCTTTGAGAAGAGAAGGGATTTGGTGTTTGGGATGGTGGAAAGTGGAGTGAGAAATGGTGGGAAATTGTTCTACACAGTGAACTCATCACAGTCTTTCTACGTGTTGGGCCAATGTGAGGGTGATTTGGCCAACAATGACTGTGTGGATTGTGTGAAGAGTGCTGAGGATCAGGCAAAAATTGAGTGCGGGGACTCAACATCTGCAGAAATTTATCTGCACAAGTGCTACATCAGCTACACCTTTTACCCCAACAATGGAGTGTGGTCAGAAGGGGCACAAGACCAGCAGAAAACCATAGCTATAGTTGTGGGAGTATTTGCAGCTCTGGGGTTCTTGATTGTTTGTTTGCTATATCTCAAGTCCGAAAAATGGGTTGAATAA 864 0.478 MIRKRYHIPFLFLFTVSRLLLLHPMSDEDNSTKLVYKDCAEQKLHDPSGIFSQNLKALLASLVELSGQKAFSTTTSGSGENVIMGMFQCRGDLSNPACCSCVSKISDMLERGELCSNLAAAARVQLSECYLRYEVVGFEQVPETLLLYKVCGPKQVNGIDGFEKRRDLVFGMVESGVRNGGKLFYTVNSSQSFYVLGQCEGDLANNDCVDCVKSAEDQAKIECGDSTSAEIYLHKCYISYTFYPNNGVWSEGAQDQQKTIAIVVGVFAALGFLIVCLLYLKSEKWVE* 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g2112 287 Gene3D - 30 138 IPR038408 -
Lja5g2112 287 Gene3D - 143 244 IPR038408 -
Lja5g2112 287 ProSiteProfiles Gnk2-homologous domain profile. 144 245 IPR002902 -
Lja5g2112 287 ProSiteProfiles Gnk2-homologous domain profile. 32 138 IPR002902 -
Lja5g2112 287 PANTHER PLASMODESMATA-LOCATED PROTEIN 1 10 282 - -
Lja5g2112 287 Pfam Salt stress response/antifungal 182 241 IPR002902 -
Lja5g2112 287 Pfam Salt stress response/antifungal 44 134 IPR002902 -
Lja5g2112 287 PANTHER ANTIFUNGAL PROTEIN GINKBILOBIN-2-LIKE 10 282 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g2112 Lja-Chr5 28771488 28774169 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g2112 38 215 Receptor kinase-like Gene Family AT4G23160 29.688 3.60e-15 73.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g2112 - - lja:Lj0g3v0100929.1 398.667
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g2112 5 28771488 28774169 Lja5g2112 5 28771488 28774169 ECH
Lja1g0991 1 9829481 9831613 Lja5g2112 5 28771488 28774169 PCT