Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g2014 ATGGGTAGAGTCCTGCTGGAAACCTCGAGCCCGTTCTCGACTTCCTCATCACCGTCACCTCCGCCGGCGACCACCTCGTCGACGTCGATCACCGACACCGTGAAGGGCTCGCACCGTTTCAAGATCACTGGGTACTCTCTGTCCAAAGGAATTGGGATTGGGAAGTACATAGCTTCTGACATTTTCTCTGTTGGTGGGTACGATTGGGCGATCTACTTCTACCCTGATGGCAAGAGCGCCGAGGACAATGGCTCCTATGTGTCTCTCTTCATCGCGCTTGCGAGTGAAGGTACCGATGTTCGGGCGCTTTTCGAGTTGACCCTGCTGGATCAGAGTGGCAAGGAGAGGCACAAGGTCCATAGCCATTTTGAGAGGACTCTGGAGAGTGGGCCTTACACTCTGAAATACCGTGGGAGCATGTGGGGTTACAAGCGGTTTTTTAAGAGAACAGCACTAGAAGCATCAGACTATCTCAAAGACGATTGTCTTAGTGTTACTTGTAGTGTTGGTGTTGTGAAGTCGCACACTGAGGGCCCTCACTTGTTTTCAATCTCAGTACCACCTTCTGACATTAATCGGCAATTTGGGAACCTACTTGAAAGTGGCAAGGGCTCTGATGTGAGTTTTGAAGTGAATGGAGAAGCTTTTGCTGCTCATAAGTTGGTACTAGCAGCCCGCTCACCTGTTTTTAAAGCCCAACTTTTTGGTCCTATGAGAGATCAGACCCAGTGTATAAAAGTTGAAGACATGGAAGCTCCAGTTTTCAAGGCATTGCTGCATTATATATATTGGGACTCACTACCTGACTTGCAAGAGCTTACTGGGTTGAACTCAAAATGGGCAACTGCCTTAATGGCTCAGCATCTGCTAGCAGCAGCTGACCGGTACGGCTTAGAGAGGCTTAAGCTCATGTGCGAAGCGTGTCTCATTGAAGATGTTGCAATAAACACTGTGGCTACAACTTTAGCATTGGCAGAGCAGCACCACTGTTTCCCGCTTAAATCAGTTTGCCTGAAATTCATTGCAAAGCCTGAAAATCTCAGAGCTGTGATGCAAACTGATGGTTTTGAGCACTTGAAGGAAAGCTGTCCATCTGTTTTGTCTGAGCTATTGCAGTACGTGGCTAGTTATACCGAGCATTCAGACTTCATGAGCAAGCATGGCAATGAAGCAGTACTTGATGGCGGTGACATGAATGGAAGGCGCGTGAAGCAAAGGCTGCAAGTGTGA 1230 0.4837 MGRVLLETSSPFSTSSSPSPPPATTSSTSITDTVKGSHRFKITGYSLSKGIGIGKYIASDIFSVGGYDWAIYFYPDGKSAEDNGSYVSLFIALASEGTDVRALFELTLLDQSGKERHKVHSHFERTLESGPYTLKYRGSMWGYKRFFKRTALEASDYLKDDCLSVTCSVGVVKSHTEGPHLFSISVPPSDINRQFGNLLESGKGSDVSFEVNGEAFAAHKLVLAARSPVFKAQLFGPMRDQTQCIKVEDMEAPVFKALLHYIYWDSLPDLQELTGLNSKWATALMAQHLLAAADRYGLERLKLMCEACLIEDVAINTVATTLALAEQHHCFPLKSVCLKFIAKPENLRAVMQTDGFEHLKESCPSVLSELLQYVASYTEHSDFMSKHGNEAVLDGGDMNGRRVKQRLQV* 410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g2014 409 SUPERFAMILY TRAF domain-like 32 176 - -
Lja5g2014 409 ProSiteProfiles MATH/TRAF domain profile. 35 169 IPR002083 GO:0005515
Lja5g2014 409 PANTHER BTB/POZ AND MATH DOMAIN-CONTAINING PROTEIN 1 17 387 IPR045005 GO:0016567
Lja5g2014 409 SMART BTB_4 205 313 IPR000210 GO:0005515
Lja5g2014 409 PANTHER BTB/POZ AND MATH DOMAIN-CONTAINING PROTEIN 1-LIKE 17 387 - -
Lja5g2014 409 SUPERFAMILY POZ domain 179 312 IPR011333 -
Lja5g2014 409 ProSiteProfiles BTB domain profile. 205 263 IPR000210 GO:0005515
Lja5g2014 409 Gene3D - 313 388 - -
Lja5g2014 409 Gene3D Potassium Channel Kv1.1; Chain A 181 307 IPR011333 -
Lja5g2014 409 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 33 174 IPR008974 GO:0005515
Lja5g2014 409 MobiDBLite consensus disorder prediction 7 31 - -
Lja5g2014 409 CDD BACK_AtBPM-like 311 373 IPR034090 -
Lja5g2014 409 SMART math_3 40 152 IPR002083 GO:0005515
Lja5g2014 409 MobiDBLite consensus disorder prediction 1 31 - -
Lja5g2014 409 CDD BTB_POZ_BPM_plant 191 309 - -
Lja5g2014 409 CDD MATH 36 169 IPR002083 GO:0005515
Lja5g2014 409 Pfam BTB/POZ domain 196 311 IPR000210 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g2014 Lja-Chr5 26260517 26264402 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g2014 K10523 - gmx:100799666 694.115
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g2014 5 26260517 26264402 Lja5g2014 5 26260517 26264402 ECH
Lja1g1160 1 11898466 11901595 Lja5g2014 5 26260517 26264402 PCT