Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g1160 ATGGACAAGGTGATCGGAGAATCCACACCACCACCAATCCCTGAAACCGTGAAGGTTTCTCAGGAATTCCAGATCACGAGTTACTCATCGCTGAACGGGATTGGGAGCGGAAAGTACTTGGCATCCGACCGGTTTGCGGTGGACGGGCACGATTTCGCCGTCTACTTCTACCCGGACGGCAAGAACGCCGACGACGGCGGCGCCTACGTGTCAATCTTCATCGTGCTGGTTAGCGAAGCAAGCAAGAACGTGAAGGCTCTGTTCGAGTTGGGAGTTTTGGATCAGAGTGGAAACCAGAAGCATATAGTGCATAGCCATTTTCACACCATGCCGGAATGTGGACCCTACATGTTGACGTGTAGTGGCAGCATGTGGGGTTACAAGCGGTTTCTTAAGAAAACAGATCTGGAGACTTTAGGATACCTCAAAGATGATTGCCTCATTGTGAATTGTAGCGTTGGTGTTGTAAGGAGTGAGGACACGCACCGAGGGACCTGA 498 0.5141 MDKVIGESTPPPIPETVKVSQEFQITSYSSLNGIGSGKYLASDRFAVDGHDFAVYFYPDGKNADDGGAYVSIFIVLVSEASKNVKALFELGVLDQSGNQKHIVHSHFHTMPECGPYMLTCSGSMWGYKRFLKKTDLETLGYLKDDCLIVNCSVGVVRSEDTHRGT* 166
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g1160 165 CDD MATH 20 153 IPR002083 GO:0005515
Lja1g1160 165 PANTHER BTB/POZ AND MATH DOMAIN-CONTAINING PROTEIN 1 13 159 IPR045005 GO:0016567
Lja1g1160 165 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 16 157 IPR008974 GO:0005515
Lja1g1160 165 ProSiteProfiles MATH/TRAF domain profile. 18 153 IPR002083 GO:0005515
Lja1g1160 165 SUPERFAMILY TRAF domain-like 16 158 - -
Lja1g1160 165 PANTHER BTB/POZ AND MATH DOMAIN-CONTAINING PROTEIN 2-LIKE 13 159 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g1160 Lja-Chr1 11898466 11901595 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g1160 K10523 - aprc:113863843 215.312
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g1160 1 11898466 11901595 Lja5g2014 5 26260517 26264402 PCT