Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g2012 ATGGCGCCCAGCCGTAAAAAGGGCGCCAGCAAAGCAGCGGCGGCGGCTGCCGCTCGCCGCAAGTGGAAAGTCGGCGATCTTGTGCTTGCCAAGGTGAAAGGCTTCCCTGCATGGCCTGCAACGGTCAGTGAACCGGAGAAGTGGGGTTACTCCACTGATTGGAAGAAAGTGCTTGTTTACTTCTTTGGAACCCAGCAAATAGCTTTCTGCAATCCTGCTGATGTGGAAGCTTTTACCGAAGAGAAAAAGCAGTCTCTTCTCCTCAAACGTCAAGGAAAGGGTGCTGATTTTGTTCGGGCTGTCCAGGAGATTGTTGATAGTTACGAGAAATTGAAAAAAGAGAGCCAACTTGATGAAGCTAGCTTGGGTGGTAATATTGTTGATGCTAATGTTTCAAATCCAGTCAGCACATCTGCCAGGGATCTGACAGATGCTCCTAAGTTGACACATGAATTGGTATGTGTAGCTGAGGATGACTCAACTGCTGTATTGAAGGAAGAATCTCATGATAAGGAAGCATTATTGGAAGAGCCTACTGATAATGTTTCTGCTGTACAATCACCTAAGCCAGTTACTTACTCTTCTCGAAAAAGATCTGCTGGTGACTTGTGCCCACGGGGCTGTGTAACACATAGACACATGCCACTACGAAGGTCGAGAATCTCGTCTCGGGCCCAAAACTTTGTGTTGCCTTGTAGTGATTGTGGAAAGAGCACTGGCAACCCATCAACTAATGAAGGACTAAGTTCATCCGTAAAGAGGAATACAAGTGTGAGGAAATCACCTGATTCTGGCTGCAATGATTTTGATTCATCTGCTTTTGTCTCAAATGGCAGCATGGAGGACAAGGGCTCTGGAATTCTCACAATTGATTCTGATGCGTTTAGCTTGAATGAAGGTAGTACAATGGATTCAAATTTTAAACTTGAACACTCTGACACTATTGAATGCCTTGAAAAAGTCGAGTTGAACAAAGCGCTTGATCTTGACATAAATACTGTAATCCATAAGAAGAAAAGAAAACCAACTAGGAAGAGGGTAACCAATGATGCTTCCAAGCCGACTGGTAGACTGGAAGAGGCTTGTGTGCAGAATACCAGTCAAAGTTCACAGAATATATGTGGAAATTCTGAACAGAGAGGCTTTGAGCAGGATGGAGATGAACACTTACCTCTTGTGAAACGAGCTAGAGTCAGGATGGGTAAATCATCTTCCATGGAGGCAGAACTCAATAGTGTTCTACAAGCTCAAGAAAAAAGCTGCAAGGAAGATATTAACTCACCACACCTGATGATCACATCCTCAAATTGTGAGAATGGTAGCTCTGCTGATGGAGATTCATCTGTGCTAAATGGAGCTTTGGATATTGTTTCTCCTTCAAAGACTTTAGCTCTGTGTTCTGGTACTCAAATTTGTAATATTAAGAAAGATCAACCATTCTTCTCTGTCGACGGTGAAGCTGCTTTGCCTCCATCTAAACGCCTTCATCGTGCTTTAGAAGCCATGTCAGCTAATGCTGCTAAAGATGGTCAAACTCATACGGAAGCTTCAATCTCCATAATGACATCAGGTCGTGCATGCTGTATATCTGCTGTCAAGAGATGTCCGTGTATAGGCAGTAATAATCAAGGAGATGATGGTTTTGGGGTGCAAAAGTTGGATTTGTTAACCTGTTCAAATCCAATGATTTCAACAGTGAATAAATCTTCTAAACTAGTGGATGAGCAGTTGACCAAGTTTGAACTGCATGAACCTGCCAAGGATGTTCTCCCAAGTGCTGCAGATCCAGTTGGTGAGGAGCTTATTAGTAATGTTGTTTGTCAAACGGCTAAAGAAGATATGGAAGTTCGTGAACAAAATTCTCCTAATCTTGATTCGAAAGGTTATGAAGCTGGAAGCACACCGGAACCATCATTACCACTTAATGGTGAGGACAATATTACAACAGTGAATCATTCAAATACATCATCTGAAGTGTCAGAACCCAATGGAATAAGCTGTCATCCTGCGGCAGATGTGAACAAGAGTGATATTATTTTACCCCAAAATAGTATTGATGTGCCTCAGAATGAGGTTGCAGCTTGTGAGGATATGAAGTGCCTGAAGCCAGCAGTTGCTGATGTTAAGATAACAAATGATATGAGTGAAGTGAGAGAGATAAAATGTAAAGGGCCAGAGAAGGATATGAATTCTGTTTCAACATCAGATGATTGTTTGGGTGAAAAGGATATTTCGGGCATGCCTTCAAGTCCATCATTGACAGATGGGGGAGATTGCATTCCACAAGGATCACCTCCAAATACATCAGTTTGCAATGTTTCTACATCAGACAGTAGTAATATCCTTCAGAATGGAAGTTGTAGCCCTGATGTACATTTACACCCAATGCAAGTGCAAGCAGTATCTGGTCCTCTTGATGGAAGTAAAAATGGGTATACAGCAACTCAACAATCAAGATCCACGGGCAAGTCAACTGAAGCAGCACGTGCTGCTTTGAAGTACTTTCAAGCAACCCTTGCAACTTTGACAAGGACGAAGGAAAGTATTGGTCGAGCAACACGCATAGCTATTGACTGTGCAAAATTTGGTCTTGCAGCAAAGGTCATGGAAAGTCTTGCTCACAATCTGGAAGAATCAAGCTTGCAGCGAAGGGTGGATTTGTTTTTTCTTGTGGATTCTATTGCGCAGTCTCGAGGTTTAAAAGGTGATGTTTGTGGAGTATATCCATCTGCTATCCAAGCAGTCCTTCCACGACTATTATCCGCAGCTGCTCCTCCTGGGAATACCGCACAAGAAAACCGGAGGCAGTGTCGCAAGGTTTTAAAGGTGTGGTTGGAGAGAAAAATCCTACCGGAGTCTCTTATTCGCCATCATATCCGGGAACTGGACTTACGTAGCAGCTCAGCTTTTGCTGGTCCATTTTCACGACGAACATCAAGAACAGAACGGGCCTTGGATGACCCTATTAGAGATATGGAGGGCATGCTTGTTGACGAATATGGAAGCAACTCAAGTTTTCAGCTGCCTGGATTTTGCATGCCCCGGATGCTGAAAGATGAAGATGGTGATGAAGGGAGCGATTCTGATGGAGAAAACTTTGAGGCTGTCACTCCCGAGCATGATTCTGAAGTACAGGAAATGGTTTCTACAATTGAAAAACACAGACATATCTTGGAAGATGTTGATGGTGAGCTTGAAATGGAAGATGTGGCTCCCTCATGTGATGTTGAAATGAATTCATTTTGCAATGGCGATAGAGGAAATGCTACACAATTTGAGAAGAACCTTCCCGTGTTCTCCACAACTGTACCTCAGGATGCACCTCCATCTTTACCTCCAGTGCCATCATCTCCTCCACCTCCACCACCGCTACCGCCTCCTCCTCCTCCTCCTCCTCCTCGTATGCCACACTTCATGCCATCTGATCCATATCAGACGGTAGTGAATTCCAAAGGTTTTACAGATTCACAGACTGTGAAAAACACCCCAGTTTCTTCCATGGCTCAGTCCTCGGCTGCGTCAAGGAGTAGCCAACCTATCAGTGATGCAGCACACCATAAAGTCCCAGAATATAGAGAAATGCAGATGCGCGGGCAAGAACCTACTTGCTCTTTCAATAGTTTCCCTGCGCCACCTTCAGACAACGTTCGACATTCTGATGGTGTTACTATGCATAATAAAGGGTATCCTATAAGACCCCCTCGGCACGTGCCATCCAATCAGTTTTCTTTTGTTCATGAGGAACGTCATATGAATCATCGAAGGGAGGTTCCACCACCACCGCCACCCCCTTCTTACCCCAATAGGCAACACTTTGTGGAGAACATGGAGAGAGAGAACTTCTACAATAATCATGAGAGAATAAAACCACCTCCATTTGATCACCGAGATAGATGGAATGGTCCTGGACCTTATCCTGGTCCTCGGTATCAGGACAACGGTGCGCCTCCTCCATATGGTTGTCATCCATATGAATCACCTAGAATGCCAGGCCATGGGTGGAGATTTCCTCCCCGGTCAGGGAACCACAACCACAGGAGTTCTGCTCCATTTAGACCACCCTTTGAAGATGCAATTCCAGTTGCAAATAGAGGTCCAAACTTTTGGCGGCCTAGGTGA 4119 0.4445 MAPSRKKGASKAAAAAAARRKWKVGDLVLAKVKGFPAWPATVSEPEKWGYSTDWKKVLVYFFGTQQIAFCNPADVEAFTEEKKQSLLLKRQGKGADFVRAVQEIVDSYEKLKKESQLDEASLGGNIVDANVSNPVSTSARDLTDAPKLTHELVCVAEDDSTAVLKEESHDKEALLEEPTDNVSAVQSPKPVTYSSRKRSAGDLCPRGCVTHRHMPLRRSRISSRAQNFVLPCSDCGKSTGNPSTNEGLSSSVKRNTSVRKSPDSGCNDFDSSAFVSNGSMEDKGSGILTIDSDAFSLNEGSTMDSNFKLEHSDTIECLEKVELNKALDLDINTVIHKKKRKPTRKRVTNDASKPTGRLEEACVQNTSQSSQNICGNSEQRGFEQDGDEHLPLVKRARVRMGKSSSMEAELNSVLQAQEKSCKEDINSPHLMITSSNCENGSSADGDSSVLNGALDIVSPSKTLALCSGTQICNIKKDQPFFSVDGEAALPPSKRLHRALEAMSANAAKDGQTHTEASISIMTSGRACCISAVKRCPCIGSNNQGDDGFGVQKLDLLTCSNPMISTVNKSSKLVDEQLTKFELHEPAKDVLPSAADPVGEELISNVVCQTAKEDMEVREQNSPNLDSKGYEAGSTPEPSLPLNGEDNITTVNHSNTSSEVSEPNGISCHPAADVNKSDIILPQNSIDVPQNEVAACEDMKCLKPAVADVKITNDMSEVREIKCKGPEKDMNSVSTSDDCLGEKDISGMPSSPSLTDGGDCIPQGSPPNTSVCNVSTSDSSNILQNGSCSPDVHLHPMQVQAVSGPLDGSKNGYTATQQSRSTGKSTEAARAALKYFQATLATLTRTKESIGRATRIAIDCAKFGLAAKVMESLAHNLEESSLQRRVDLFFLVDSIAQSRGLKGDVCGVYPSAIQAVLPRLLSAAAPPGNTAQENRRQCRKVLKVWLERKILPESLIRHHIRELDLRSSSAFAGPFSRRTSRTERALDDPIRDMEGMLVDEYGSNSSFQLPGFCMPRMLKDEDGDEGSDSDGENFEAVTPEHDSEVQEMVSTIEKHRHILEDVDGELEMEDVAPSCDVEMNSFCNGDRGNATQFEKNLPVFSTTVPQDAPPSLPPVPSSPPPPPPLPPPPPPPPPRMPHFMPSDPYQTVVNSKGFTDSQTVKNTPVSSMAQSSAASRSSQPISDAAHHKVPEYREMQMRGQEPTCSFNSFPAPPSDNVRHSDGVTMHNKGYPIRPPRHVPSNQFSFVHEERHMNHRREVPPPPPPPSYPNRQHFVENMERENFYNNHERIKPPPFDHRDRWNGPGPYPGPRYQDNGAPPPYGCHPYESPRMPGHGWRFPPRSGNHNHRSSAPFRPPFEDAIPVANRGPNFWRPR* 1373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g2012 1372 ProSiteProfiles CID domain profile. 827 966 IPR006569 -
Lja5g2012 1372 MobiDBLite consensus disorder prediction 1284 1372 - -
Lja5g2012 1372 MobiDBLite consensus disorder prediction 1206 1237 - -
Lja5g2012 1372 MobiDBLite consensus disorder prediction 803 823 - -
Lja5g2012 1372 PANTHER PWWP DOMAIN PROTEIN 1 1372 - -
Lja5g2012 1372 MobiDBLite consensus disorder prediction 1106 1139 - -
Lja5g2012 1372 Pfam CID domain 834 955 IPR006569 -
Lja5g2012 1372 MobiDBLite consensus disorder prediction 180 194 - -
Lja5g2012 1372 Pfam PWWP domain 25 108 IPR000313 -
Lja5g2012 1372 MobiDBLite consensus disorder prediction 614 641 - -
Lja5g2012 1372 CDD HDGF_related 24 105 IPR035496 -
Lja5g2012 1372 MobiDBLite consensus disorder prediction 1019 1043 - -
Lja5g2012 1372 MobiDBLite consensus disorder prediction 169 199 - -
Lja5g2012 1372 PANTHER HEPATOMA-DERIVED GROWTH FACTOR-RELATED 1 1372 - -
Lja5g2012 1372 SUPERFAMILY Tudor/PWWP/MBT 19 115 - -
Lja5g2012 1372 MobiDBLite consensus disorder prediction 239 265 - -
Lja5g2012 1372 Gene3D - 14 119 - -
Lja5g2012 1372 ProSiteProfiles PWWP domain profile. 24 81 IPR000313 -
Lja5g2012 1372 Gene3D - 828 968 IPR008942 -
Lja5g2012 1372 SMART 558neu5 834 963 IPR006569 -
Lja5g2012 1372 MobiDBLite consensus disorder prediction 1100 1183 - -
Lja5g2012 1372 MobiDBLite consensus disorder prediction 1143 1181 - -
Lja5g2012 1372 SMART PWWP_4 22 79 IPR000313 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g2012 Lja-Chr5 26189521 26206067 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g2012 - - gmx:102664053 1808.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g2012 5 26189521 26206067 Lja5g2012 5 26189521 26206067 ECH
Lja1g1154 1 11843587 11853613 Lja5g2012 5 26189521 26206067 PCT