Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g2007 ATGTTCTCCAAAACCAAAACCCAAGCTTTCTCCTCCTACCTGAAGAACAATCTGAAGCTTCTCAACATCGACACACGCTCTATCTCCAGTCTCAAAGTAGTGTGGCGCAAAGACCAAGCACTAGACCGCGCCATAGACAACGACAAGCGTTACAAGCAATGTATCCGCGTCGTGAAGGAGGTTCTCAACGAACCGGGTCAAGTCATCCCTCTCCGCTACCTCGAGAAACGCCGTGAGAGGATGCGGCTCAAGGTGAAAGTCGAAACGTTTCTGAATCAAAACCCATTTTTGTTTGATGTATATTATGATAGAATCAAACCCAAAACCGAACCGGTTCGGTTTCTCCGGGTCAGTGACCGGCTCCGCCAGTTTCTGGAGGAGGAGAAGCGGGTTTTTACGGTGAATGAGCCGTTGATTGTGTCTAAGTTGTGTAAATTGTTGATGATGTCTAAGGATAAGGTGGTTAGTGCTGATAAATTGCTTCATGTGAAGAGGGAGTTTGGGTTTCCTAATGATTTTTTGGTTGATTTGGTTCCGAGGTATCCGGAGTATTTTAGGTTAACTGGGTTGCCGGGGGAGGGAAAATCGTTTTTGGAATTGGTTACTTGGAACCCCGAGTTTGCGAAATCGGTTATTGAGCGAAGGGCGGAAGAGGAGAGTCGGTGTACCGGGATTAGGGTTAGGCCGAATTTCAATGTGAAGCTTCCGCGAGGGTTTGTGTTGAAGAAAGAGATGAGGGAGTGGGTTAGGGATTGGTTGGAGCTTGAGTATGTGTCCCCTTATGAAGATGTGTCCCAGTTGGATCAGGCTTGTAGGGAGATGGAGAAGTGGAGGATTGGGGTGTTCCATGAGCTGCTTTCACTTTCGTTGTATAAGAGGGTTCCTGTGCCGATTCTCGGGAAGTTTTGTGATGAGTATAGGTTTTCAAATGCATTTTCAAGTGCTTTTACAAGGCATTCTGGGATATTCTATATGTCCTTGAAAGGTGGGATCGAAACCGCTGTGTTGAGAGAAGCGTACGATGGTGATAAGTTGATTGACCTGGATCCTCTGCTCCAGATAAAAGATAAATTTGTTGAGTTGATGGAGGAGGGTTGGCGGCAAAGACAAGAGGAGTTGAGGCTGAAACAAGAGAAAATTAAGAAAGACATGGAACTTCTTGCCACGAAAGTTACTGAGTAA 1182 0.4602 MFSKTKTQAFSSYLKNNLKLLNIDTRSISSLKVVWRKDQALDRAIDNDKRYKQCIRVVKEVLNEPGQVIPLRYLEKRRERMRLKVKVETFLNQNPFLFDVYYDRIKPKTEPVRFLRVSDRLRQFLEEEKRVFTVNEPLIVSKLCKLLMMSKDKVVSADKLLHVKREFGFPNDFLVDLVPRYPEYFRLTGLPGEGKSFLELVTWNPEFAKSVIERRAEEESRCTGIRVRPNFNVKLPRGFVLKKEMREWVRDWLELEYVSPYEDVSQLDQACREMEKWRIGVFHELLSLSLYKRVPVPILGKFCDEYRFSNAFSSAFTRHSGIFYMSLKGGIETAVLREAYDGDKLIDLDPLLQIKDKFVELMEEGWRQRQEELRLKQEKIKKDMELLATKVTE* 394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g2007 393 Pfam Plant organelle RNA recognition domain 37 366 IPR021099 GO:0003723
Lja5g2007 393 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE FAMILY PROTEIN 17 388 - -
Lja5g2007 393 PANTHER PROTEIN WHAT'S THIS FACTOR 1 HOMOLOG, CHLOROPLASTIC 17 388 IPR045040 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g2007 Lja-Chr5 26132074 26133798 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g2007 - - lang:109336290 653.669
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g2007 5 26132074 26133798 Lja5g2007 5 26132074 26133798 ECH
Lja1g0585 1 5327339 5330803 Lja5g2007 5 26132074 26133798 PCT