Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g0585 ATGGTTGTTGCAAGAACGATGAACAGAAATGGCGTGGTTCCTTGGATGAAGCTCCAATGGCGGGGCATAGCGAAAGTGCGTTTGAAGTGGGTGAAGAATCGAAGCCTCGACCACATCATCGACAAGGAAACCGATCTCAAAGCCGCTTCCCTCCTCAAAGACGCAATCAACCGTTCCTCCACCGGCTTCCTCACCGCAAAGTCCTTCTCCGGCTGGCAAAAGCTTCTCGGCCTCACCGTCCCCGTTCTCCGCTTCATCCGCCGCTACCCCACCCTCTTCCACGAGTTCCCTCATCCTCGCTGGCCCTCCCTCCCCTGCTTCCGCTTAACCGACACCGCACTCCTCCTTCACTCTCAGGAGCAATCCCTCCACAACCACCACGAAAACGACACCGTTGAGAGGCTCTCCAAGTTCCTCATGATGACGAAAACCCGCACTGTTCCCCTTGTCTCCCTCTACCCTCTCAAATGGGACATTGGTTTGCCTGATTCCTTCGAGAAAACCCTAATCCCCAAATTCCCTGACCAATTTCAATTCGTTAAGGCCCCCAACGGCGTCTCCGCGGTGCGATTATCCAAATGGTGTGAGGAATTCGCGGTCTCCGCATTGCAGAAGAGCAATGAGCGTGACGGTGGTGATGATGGGTATAGGGACTTCAAGAGAGGGAAGGCGGCGCTGGTGTTTCCGATGAGGTTTCCGAGGGGTTACGGGGCGCAGAAGAAGGTGAGGTTTTGGATGGATGAGTTTCACAAGCTGCCTTACATTTCACCCTATGCTGATTCCTCTAAGATTGATCCAAACAGTGATTTGATGGAGAAGCGTGTTGTTGGGGTTCTTCATGAGCTTTTGAGTTTGACTATGCACAAGAAAACCAAGAGGAACTACTTGAGAAGCTTGAGGGAGGAGTTGAATCTTCCTCACAAGTTTACCAGGATTTTTACTAGGTATCCAGGGATATTTTATCTCTCATTGAAGTGTAAGACGACGACGGTTACTCTCCGGGAAGGGTATGCCAGGGGAAAGCTTGTGGACCCTCATCCTCTTGTTCGCCATAGAGACAAGTTCTACCATGTCATGAAGACGGGGCTTCTTTATCGCGGTGATGGCTCAATCCCCAAACCTGAGGGTGGTGCTTTGCTGCTTGATGAAATAGGGGATGAGGGTTCTGAGGAGGAAGAGGTTGAAACAAGTGATGAATTCTCCGAGGGTGAAGTTTCAGGGTCGGATAGTGAATGA 1236 0.5138 MVVARTMNRNGVVPWMKLQWRGIAKVRLKWVKNRSLDHIIDKETDLKAASLLKDAINRSSTGFLTAKSFSGWQKLLGLTVPVLRFIRRYPTLFHEFPHPRWPSLPCFRLTDTALLLHSQEQSLHNHHENDTVERLSKFLMMTKTRTVPLVSLYPLKWDIGLPDSFEKTLIPKFPDQFQFVKAPNGVSAVRLSKWCEEFAVSALQKSNERDGGDDGYRDFKRGKAALVFPMRFPRGYGAQKKVRFWMDEFHKLPYISPYADSSKIDPNSDLMEKRVVGVLHELLSLTMHKKTKRNYLRSLREELNLPHKFTRIFTRYPGIFYLSLKCKTTTVTLREGYARGKLVDPHPLVRHRDKFYHVMKTGLLYRGDGSIPKPEGGALLLDEIGDEGSEEEEVETSDEFSEGEVSGSDSE* 412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g0585 411 PANTHER OS04G0546100 PROTEIN 17 407 - -
Lja1g0585 411 MobiDBLite consensus disorder prediction 384 411 - -
Lja1g0585 411 PANTHER PROTEIN WHAT'S THIS FACTOR 1 HOMOLOG, CHLOROPLASTIC 17 407 IPR045040 GO:0003723
Lja1g0585 411 Pfam Plant organelle RNA recognition domain 31 362 IPR021099 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g0585 Lja-Chr1 5327339 5330803 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g0585 - - vun:114164383 624.009
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g0585 1 5327339 5330803 Lja1g0585 1 5327339 5330803 ECH
Lja1g0585 1 5327339 5330803 Lja5g2007 5 26132074 26133798 PCT