Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g1996 ATGGCTAACAAATATTCCAACTATCAAAATCTATTCATCTGCACCCTCCTCTTCCTATTCTCTACTACTGCATTACTTACTCAGGCCAAAACATCTTTCAGGCCCAAAGCCCTTGTTGTGCCAGTCACAAAAGATGCCTCCACACTCCAATACCTCACTAAAATCAACCAAAGAACCCCACAAGTTCCAGTAAAACTTGTCGTCGATCTCGGAGGCAATTTCTTGTGGGTCGACTGTGATACCAACTACACCTCCTCAACCTACCGCCCAGCACGCTGCAAATCCACCCAGTGCTCCCTGGCCAAATCCATCGGCTGCGGTACCTGCTTCTCATCCCCCAAGCCTGGCTGCAACAACAACACCTGCAGCCTCCTCCCGGGCAACACCGTCACCGAACACTCCACCATCGGCGAGGTCGCCCAAGATACTCTCTCAATCCAGTCCACCAACGGCCTCACACCCGGCCGAATCGCCACCGTCTCGAACTTCCTCTTCACCTGCGGGTCGACCTTTTTACTAAAAGGACTCAAAAAAGGTGTTTCTGGCATGGCCGGCCTCGGCCGGACGAAAATCGCGCTGCCGTCGCAATTCTCCTCCGCATTCAGCTTCCACCGCAAGTTCGCAATCTGCTTATCTTCATCAACCGGCGTAGTTTTCTTCGGGGACGGGCCTTATGTTCTCCTCCCCAACGTCGACGCCTCTAAAGGCCTCTCGTTCACGCCGCTGCTAACCAACTCGGTGAGCACCTCCTCCGCCGAGTATTTCATCGGCGTGAAATCAATCGTGATTGATGGAAAAACGGTTACCGTTAAATCGAGTTTGTTAGCCATTGACAATAACAGCGTTGGTGGAACCAAGATCAGCACGGTGAATCCTTACACGGTTCTCGAGGATTCTATTTTCAAGGCGGTTACGAAGGCGTTTATCAACGCGTCTGTGGCTAGGAACATTAAGAGGGTGGCGGCGGTTAAGCCGTTTGAGGTTTGCTTCAGCGGTAAGGGCGTGGGGAGTACGCGGTTGGGTGCGGCGGTGCCTACGGTGGAGTTTGTGATGCAGAATGGTGTGACGTGGTATGTTTTTGGAGCGAACTCGGTGGTAGATGTGCATAATGATGGTAGTGTTTTGTGTCTTGGGTTTGTGAACGGTGGGAAGAATGCGAGGACTTCGATTGTGATTGGTGGGTATCAGCTGGAGAATAATCTGGTGCAGTTTGATTTGGCTGCGTCTAGATTGGGGTTCAGCTCTTTGCTCTATGGAAGGCAAACCACATGTGCCAACTTCAACTTCACCTCCACGGTGTAA 1302 0.5169 MANKYSNYQNLFICTLLFLFSTTALLTQAKTSFRPKALVVPVTKDASTLQYLTKINQRTPQVPVKLVVDLGGNFLWVDCDTNYTSSTYRPARCKSTQCSLAKSIGCGTCFSSPKPGCNNNTCSLLPGNTVTEHSTIGEVAQDTLSIQSTNGLTPGRIATVSNFLFTCGSTFLLKGLKKGVSGMAGLGRTKIALPSQFSSAFSFHRKFAICLSSSTGVVFFGDGPYVLLPNVDASKGLSFTPLLTNSVSTSSAEYFIGVKSIVIDGKTVTVKSSLLAIDNNSVGGTKISTVNPYTVLEDSIFKAVTKAFINASVARNIKRVAAVKPFEVCFSGKGVGSTRLGAAVPTVEFVMQNGVTWYVFGANSVVDVHNDGSVLCLGFVNGGKNARTSIVIGGYQLENNLVQFDLAASRLGFSSLLYGRQTTCANFNFTSTV* 434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g1996 433 CDD xylanase_inhibitor_I_like 56 417 IPR033868 -
Lja5g1996 433 PANTHER EUKARYOTIC ASPARTYL PROTEASE FAMILY PROTEIN 15 432 - -
Lja5g1996 433 SUPERFAMILY Acid proteases 42 424 IPR021109 -
Lja5g1996 433 PANTHER ASPARTYL PROTEASE-RELATED 15 432 IPR001461 GO:0004190|GO:0006508
Lja5g1996 433 Pfam Xylanase inhibitor C-terminal 253 414 IPR032799 -
Lja5g1996 433 Gene3D Acid Proteases 25 222 IPR021109 -
Lja5g1996 433 Pfam Xylanase inhibitor N-terminal 51 222 IPR032861 -
Lja5g1996 433 ProSiteProfiles Peptidase family A1 domain profile. 51 414 IPR033121 -
Lja5g1996 433 Gene3D Acid Proteases 223 431 IPR021109 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g1996 Lja-Chr5 25953127 25954428 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g1996 35 415 Miscellaneous Gene Families AT1G44130 23.929 1.74e-13 70.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g1996 - - vun:114190071 595.89
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g1996 5 25953127 25954428 Lja5g1996 5 25953127 25954428 ECH
Lja1g1149 1 11799679 11802448 Lja5g1996 5 25953127 25954428 PCT