Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g1149 ATGTATTTAGAAAAACATCATTTAATATATTTTTTAATACTAAACAACTCTACCCAATTCTACACACTCACTCTACACCTCAAAACCCCTCCCCAACCCACCAAACTCCACCTCCACCTAGGTTCTTCCCTCACCTGGCTCCTCTGCAACCCCACCACCTACAACTCCTCCTCCTCCTCCTACCACCCCCTCCCCTGCAACTCCTCCCTCTGCTCCTCCTTCCACTCCTCCGCTTGCACCCACAACACATGCGCCCTCTTCCCGGAAAACCCCATCACCAGAACCACCGTTCTCGCCACCGCACTTCTCGACTCGCTCACTCTCCCCACCTCAACTCAGACCCTACTCGCTCACATCTCCGATTTCCTCTTCTCTTGCTCAACCGCCCAATTGCTCCAAGGCCTCGCCACCAACGCCGCCGGTCTAGCCGCCTTGGGCCGGTCCAACCACTCCCTCCCGGCTCAAATCAGCTCTGCCTTCTCCTCCCCTAATATCTTCGCACTCTGCTTACCCGGTTCATCATCCCAAACCGGCACGGCTTTCTTCGGTTCAACCGGACCGTATTTCTCCTCTTCTTCCAAAATTGACCTCTCTAAATCGCTTAATTACACTCCGCTAGTAACAAACCCGGTCGGTGACACCGTCGTCACCGACAACTCACAACCGTCCGACGAGTATTTTATAAACGTGACTTCAATCCGGATCAACGGTGTGCAGCTTCCCATCAACCAGTCAATCCTGACCGTTGATCAAAACGGCTACGGTGGGACCAAGATCAGCACTTCAAATCCCTACACTGTTCTAGAAAGTTCCATCTACAAAGCGTTTGTTGAATTGTTTGTGAACCAGTCCTCAACGGCGTTTAAACTAACGGTGACGGAAGCTGTGGCGCCGTTTGGTGCGTGCTACCATGCGGAAGACCTTACGGAGACGCGGGTTGGACCTGCGGTGCCTACCGTTGATCTTGTGATGGATGGCGAGGATGTGTTTTGGAGATTGTTTGGGAGCAATTCGATGGTGAGGATTGAGAGTGGAGGAGGGGTGGTGTGGTGTTTGGGTTTTGTGGATGGTGGGACCCGTAGGAGGACAGGCGTTGTGATTGGAGGGCATCAGATGGAGGATAATCTTGTGCAGTTTGATGTTGAGGCAAATAGATTTGGGTTCTCCTCATCTCTTTTGCTTCAGGGTGCCACGTGTGCTTTTGGCTGA 1209 0.5227 MYLEKHHLIYFLILNNSTQFYTLTLHLKTPPQPTKLHLHLGSSLTWLLCNPTTYNSSSSSYHPLPCNSSLCSSFHSSACTHNTCALFPENPITRTTVLATALLDSLTLPTSTQTLLAHISDFLFSCSTAQLLQGLATNAAGLAALGRSNHSLPAQISSAFSSPNIFALCLPGSSSQTGTAFFGSTGPYFSSSSKIDLSKSLNYTPLVTNPVGDTVVTDNSQPSDEYFINVTSIRINGVQLPINQSILTVDQNGYGGTKISTSNPYTVLESSIYKAFVELFVNQSSTAFKLTVTEAVAPFGACYHAEDLTETRVGPAVPTVDLVMDGEDVFWRLFGSNSMVRIESGGGVVWCLGFVDGGTRRRTGVVIGGHQMEDNLVQFDVEANRFGFSSSLLLQGATCAFG* 403
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g1149 402 Pfam Xylanase inhibitor N-terminal 21 184 IPR032861 -
Lja1g1149 402 Gene3D Acid Proteases 186 401 IPR021109 -
Lja1g1149 402 SUPERFAMILY Acid proteases 14 393 IPR021109 -
Lja1g1149 402 ProSiteProfiles Peptidase family A1 domain profile. 21 389 IPR033121 -
Lja1g1149 402 PANTHER ASPARTYL PROTEASE-RELATED 14 401 IPR001461 GO:0004190|GO:0006508
Lja1g1149 402 Gene3D Acid Proteases 4 184 IPR021109 -
Lja1g1149 402 Pfam Xylanase inhibitor C-terminal 225 389 IPR032799 -
Lja1g1149 402 PANTHER OS05G0403000 PROTEIN 14 401 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g1149 Lja-Chr1 11799679 11802448 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g1149 - - pvu:PHAVU_001G149500g 479.174
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g1149 1 11799679 11802448 Lja1g1149 1 11799679 11802448 ECH
Lja1g1149 1 11799679 11802448 Lja5g1996 5 25953127 25954428 PCT