Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g1987 ATGGCGCGCCATTCCACCCCCCACGGCCGCAAAGAAGTTCGAATCGCCGTCGCCGGCGACGGAGCCACCGGTAAATCCACCCTCATCGCCGCTATGGCGTCGGATTCTTTCCCCGACACCGTCCCCTCGGTGCTTCCCCCAACTCGCCTGCCGCACAATTCGTTCCCTGATTCCCTTCCTCTCACCGTCATTGACACACCTTCCAGTTTGGGGAAACAAGGTTTGCGCAATGAAGAGTTGAAGAAAGCTGATGTGGTTGTTTTGACCTATGCTTGTGATGAGCCAGAGAGCTTTCAGCGTGTGAGTTCTTACTGGCTCCCTGAGCTGAAGAGATTGGAGGTGAAGGCACCTGTGATTGTGGCTGGTTGCAGGCTTGATCTTCGTAACGAAAGCCAGCAAGTGAGCTTGGAGAGTCTCACGGCACCTATCATGATACAGTTCAGGGAAATCGCCACATGTATTGAATGCTCCGCGGCAACGCTTTATCAGGTCCCTGAAGTTTTTTATTTTGCACAAAGAGCAGTGCTACATCCAGTTGACCCATTGTATGATTATAGAGAGCATGCTTTAACAGGTCGATGTTTAAGGGCATTGAGAAGAATATTTGTTGTTTGTGATCAAAATATGGATGGTGCCCTCAGTGATGCCGAACTCAATGAGTTTCAGGTTAAATGCTTCAATAAACCGTTGCAACCATCCGAAGTGGCAAAAATAAAAACAATTATACAGCAGAAGGTTCCTGAAGGAGTCAACTCCCATGGTCTCACTTTTCCAGGATTTATATTTGTACATGACATGTTCTTAAAGAGAGGGCGAATAGAGGCATTTTGGGCGGTTTTAAGAAAGTTTGGATATGATAATGATTTAAAACTTCAGGATGATTTCCTTCCAGTTCCATCGAAACAGGCTTCTGATCAGAGTGTCGAGTTGACAAGTGAAGCTGTGGAGTTTCTAAATGGTATCTTCCGGTTGTTAGATACGGATAAAGATCGATCCCTTCGACCTGCGGAAGTTGACAAGCTATTTGATGTTGCTCCAGAAAGCCCGTGGAATGACGCTCCATATAAGGATGTAGCAGAGAAAAATGATATGGGTTACATTACTCTAAACGGATTTCTGTCTCAG 1125 0.464 MARHSTPHGRKEVRIAVAGDGATGKSTLIAAMASDSFPDTVPSVLPPTRLPHNSFPDSLPLTVIDTPSSLGKQGLRNEELKKADVVVLTYACDEPESFQRVSSYWLPELKRLEVKAPVIVAGCRLDLRNESQQVSLESLTAPIMIQFREIATCIECSAATLYQVPEVFYFAQRAVLHPVDPLYDYREHALTGRCLRALRRIFVVCDQNMDGALSDAELNEFQVKCFNKPLQPSEVAKIKTIIQQKVPEGVNSHGLTFPGFIFVHDMFLKRGRIEAFWAVLRKFGYDNDLKLQDDFLPVPSKQASDQSVELTSEAVEFLNGIFRLLDTDKDRSLRPAEVDKLFDVAPESPWNDAPYKDVAEKNDMGYITLNGFLSQ 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g1987 375 ProSiteProfiles Miro domain profile. 10 177 IPR020860 GO:0003924|GO:0005525
Lja5g1987 375 ProSitePatterns EF-hand calcium-binding domain. 206 218 IPR018247 -
Lja5g1987 375 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 10 210 IPR027417 -
Lja5g1987 375 SMART rho_sub_3 15 178 IPR001806 GO:0003924|GO:0005525
Lja5g1987 375 SUPERFAMILY EF-hand 181 374 IPR011992 -
Lja5g1987 375 Gene3D - 185 289 - -
Lja5g1987 375 PANTHER MITOCHONDRIAL RHO GTPASE 4 366 - -
Lja5g1987 375 Gene3D - 291 375 - -
Lja5g1987 375 Pfam Ras family 15 175 IPR001806 GO:0003924|GO:0005525
Lja5g1987 375 SMART rab_sub_5 13 178 - -
Lja5g1987 375 Pfam EF hand associated 228 313 IPR013567 -
Lja5g1987 375 Gene3D - 10 180 IPR027417 -
Lja5g1987 375 PRINTS Transforming protein P21 ras signature 153 175 - -
Lja5g1987 375 PRINTS Transforming protein P21 ras signature 13 34 - -
Lja5g1987 375 PRINTS Transforming protein P21 ras signature 114 127 - -
Lja5g1987 375 PANTHER RHO FAMILY GTPASE 4 366 IPR003578 GO:0005525|GO:0007264
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g1987 Lja-Chr5 25740093 25745441 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g1987 1 375 EF-hand Containing Proteins AT3G63150 56.533 3.95e-161 464
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g1987 K07870 - gmx:100806983 620.928
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g1136 1 11664041 11671872 Lja5g1987 5 25740093 25745441 PCT