Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g1136 ATGAGCGTGCCCGGTCGTGCCGGAGTTCGAGTCGTCGTCGTCGGCGACCGCGGCACCGGAAAATCAAGCCTCATAGCTGCTGCGGCGTCGGATTCCTTCCACGACGCCGTTCCGCCCCTGCTTCCTCCCACTCTTTTGCCCGTCGATTTGTACCCCGACAACGTTCCCATCACCATCATCGACACATCCTCCAGCTTGGAGAAACAAGCAAAGCGAAATGAAGAATTGAGAAGAGCTGATACCGTGGTTTTAACATATGCTTGCAATGATCCGCAGTCGTTTTCGCGGTTGGGTTCTTACTGGATTGAGGAACTGCGGAGGTTGAAGGTGGATGTACCTGTAGTTGTAGTTGGTTGCAAGTTAGATCTGCAGGATGAAAGCCAGCATGTGAGTTCGGAGCAACTCATGAAAGAGCTTCTACTACAGAACGAGCAAATTGTCACCTGCATTGAATGCTCTGCTTCTACACTATACCAGGTCCCTGAAGTTTTTTATTTTGCACAAAAAGCGGTACTATATCCTGTACATCCATTATATTGTCATGAAAATCAGGCTTTAACAGATCGATGCGTAAGGGCATTGAGAAGAATATTTGTTCTTTGTGACTCTGACATGGACGATGCTCTCAATGATGCAGAACTAAACGATTTCCAGGTTAGATGTTTCAATGTGGCATTGAAATCATCTGAAATAGAAGGGATAAAAACAGTTGTACATCAGAATGTACCTGAAGGAATCAACTCGCGTGGTCTTACTTTTCCAGGATTTCTTTATGTCCATACTATGTTCCTAAGGCAACAGCGTGCTGAGGCATTATGGGCTGTTTTAAGAAGCTTTGGATATGATATTGATTTGAAGCTCCAGGATCATTTCCTTCTTGTTCCATCTAAGAATGCTTCTGATCAGAGTGTGGAACTGACAGGTGAAGCTGTAGAGTTTCTATATGGTATCTTCCGACTGTTAGACACGGATAAAGATCGGGCCCTACAACCTGCTGAAGTTGATAAGCTATTTTGTACTGCTCCAGAAAGTCCATGGAATGATTCTCCATATGCGGATGCTGCGGAGAGAACTGACATGGGTTACATATCTCTTAATGGATTTCTGTCCCAGTGGGCCCTTATGACATTACTTGATCCACCACGTAGCCTAGCCAATTTGATTTATATTGGATATAGTGGTAATCCGGCTGCAGCACTCCATGTTACTCGTAGAAGATCAGTAGATCGCAAGAAGCACGCAACAGAAAGGAATGTGTTCCAATGCTATGTTTTTGGTTCAAAAAATGCAGGGAAATCTGCTCTGTTGGATGCATTCTTGGGAAGGCATTTTTCGACCAATTATACTCCGACTACAGTTGAGAAGTTTGCTGCAAATGCTATTGAGTTAATTGGGGGAACTAAGAAAACTCTTGTATTGCGGGAGATACCAGAGGGTGAAGTATCGAAAGTATTGTCAAATCAGGATTGTTTGGCAGCATGTGATGTGGCTGTTTTTGTATATGACAGCTCAGATGAGTCTTCATGGAAGAAATCCAGAGATTTGCTTGAGAAGGTTGCTATGCAAGGAGATCTGACTGGCCACAGAGTTCCTTGCCTCCTTATTGCTGCTAAGGACGATTTAACTCCATACCCAAGGGCAGTCCAAGATTCAGTGAAGGTTACTGAGGAATTGGGAATAGAGGGACCTATTCATGTGAGTATGAAATCAGGTGATTCAAGTAATGTGTACAACAAAATTATTAGTGCTGCAGAACACCCTCATTTAAGCATTCCAGAGACTGAGATTGGGAGGAAAAGAAAGCAATACCGCCGGCTTCTTCAGAATTCTCTTATTTACGCCTCAGTTGGGACTGCTGTGGCAGTTGTTGGTGTGGCCGCATTTCGTGTATATGCAATGAAGAAGAACTCTTCTGCGTAG 1920 0.4422 MSVPGRAGVRVVVVGDRGTGKSSLIAAAASDSFHDAVPPLLPPTLLPVDLYPDNVPITIIDTSSSLEKQAKRNEELRRADTVVLTYACNDPQSFSRLGSYWIEELRRLKVDVPVVVVGCKLDLQDESQHVSSEQLMKELLLQNEQIVTCIECSASTLYQVPEVFYFAQKAVLYPVHPLYCHENQALTDRCVRALRRIFVLCDSDMDDALNDAELNDFQVRCFNVALKSSEIEGIKTVVHQNVPEGINSRGLTFPGFLYVHTMFLRQQRAEALWAVLRSFGYDIDLKLQDHFLLVPSKNASDQSVELTGEAVEFLYGIFRLLDTDKDRALQPAEVDKLFCTAPESPWNDSPYADAAERTDMGYISLNGFLSQWALMTLLDPPRSLANLIYIGYSGNPAAALHVTRRRSVDRKKHATERNVFQCYVFGSKNAGKSALLDAFLGRHFSTNYTPTTVEKFAANAIELIGGTKKTLVLREIPEGEVSKVLSNQDCLAACDVAVFVYDSSDESSWKKSRDLLEKVAMQGDLTGHRVPCLLIAAKDDLTPYPRAVQDSVKVTEELGIEGPIHVSMKSGDSSNVYNKIISAAEHPHLSIPETEIGRKRKQYRRLLQNSLIYASVGTAVAVVGVAAFRVYAMKKNSSA* 640
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g1136 639 Gene3D - 4 174 IPR027417 -
Lja1g1136 639 Gene3D - 180 285 - -
Lja1g1136 639 ProSiteProfiles Miro domain profile. 6 173 IPR020860 GO:0003924|GO:0005525
Lja1g1136 639 Gene3D - 483 584 IPR027417 -
Lja1g1136 639 PIRSF Miro 5 639 IPR021181 GO:0003924|GO:0005509|GO:0005525|GO:0007005|GO:0031307
Lja1g1136 639 Gene3D - 287 477 - -
Lja1g1136 639 PANTHER RHO FAMILY GTPASE 2 489 IPR003578 GO:0005525|GO:0007264
Lja1g1136 639 SUPERFAMILY EF-hand 177 373 IPR011992 -
Lja1g1136 639 ProSiteProfiles Miro domain profile. 417 586 IPR020860 GO:0003924|GO:0005525
Lja1g1136 639 Pfam EF hand associated 346 413 IPR013566 -
Lja1g1136 639 Pfam EF hand associated 226 308 IPR013567 -
Lja1g1136 639 SMART rho_sub_3 11 174 IPR001806 GO:0003924|GO:0005525
Lja1g1136 639 CDD Miro2 416 595 - -
Lja1g1136 639 SMART ras_sub_4 10 174 - -
Lja1g1136 639 PANTHER MITOCHONDRIAL RHO GTPASE 2 489 - -
Lja1g1136 639 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 9 206 IPR027417 -
Lja1g1136 639 PRINTS Transforming protein P21 ras signature 9 30 - -
Lja1g1136 639 PRINTS Transforming protein P21 ras signature 110 123 - -
Lja1g1136 639 PRINTS Transforming protein P21 ras signature 149 171 - -
Lja1g1136 639 Pfam Ras family 10 171 IPR001806 GO:0003924|GO:0005525
Lja1g1136 639 Pfam Ras family 424 549 IPR001806 GO:0003924|GO:0005525
Lja1g1136 639 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 416 590 IPR027417 -
Lja1g1136 639 SMART rab_sub_5 9 174 - -
Lja1g1136 639 ProSitePatterns EF-hand calcium-binding domain. 322 334 IPR018247 -
Lja1g1136 639 ProSiteProfiles small GTPase Rab1 family profile. 1 221 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g1136 Lja-Chr1 11664041 11671872 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g1136 2 637 EF-hand Containing Proteins AT3G63150 56.761 0.0 767
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g1136 K07870 - gmx:100803790 984.941
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g1136 1 11664041 11671872 Lja5g1987 5 25740093 25745441 PCT