Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g1962 ATGATGCTCAGAAACAGATCAAGACCAGTCACAAAGCCAAGTTTGATGGGTGATCACACCTCTTCTCAACAATCTCCAAACAAAAACTATGTTAGGACTACCCCATCTCTATTTGGATCACAAAAATTGAGAGATTTCACCATGAAGTGTCTCTCAGGAGGAGCTGAGGCTTTGAGAAGCCCCACATCAATTCTTGACACCAGAGCATTATTATCCCCACATGGGAGTCCCATATCACCAGCTATTACCTCCCAAAGAGTGCACTCCAAAAACACATACTCATGGGACAAGGTTGATTCAAAAGGAATTGGCCTTGCTCTTGTGGGTGAACTCAAAGATGATGATGATGATTATGACGCTATTCATTCTGATCCTCATAAGCCAAACAAAGGGAAAGTCCTGTTTGGAACTAAGTTTAAGATCAAAATTCCTTCCCTGCTTCCAAATTCCCCTTTTGAGTCTAAAACATGTGCTAATGCTGATTTTGGGGCCAAAGCCAAGGATTCTGAGAATTTAGGAACTTATAGAAAGGATTCTGATTCTCTACAAGCTGTTCCTGCTGCTACTGGTGTTATGAGATTGAGCGAGATGGAGCTCTCTGAAGAGTACACATGTGTGATTTCACATGGAGTTAATCCAAGAACAACTCATATATTTGATAATTGTGTTGTGGAAAGCTACTTCTCTCTGCCCAATAACCAGCACTCTGCTGCTTCAGTGCATTTCCTTAACTTTTGTTATACTTGCAAGAAGCATCTTGAACAGACAAAAGACATCTTTATTTACAGGGGAGAAAAAGCCTTCTGCAGCCAAGAATGTCGCCACCAAGAGATGGTGTTAGATGGAGCAGAAAATTAA 858 0.4114 MMLRNRSRPVTKPSLMGDHTSSQQSPNKNYVRTTPSLFGSQKLRDFTMKCLSGGAEALRSPTSILDTRALLSPHGSPISPAITSQRVHSKNTYSWDKVDSKGIGLALVGELKDDDDDYDAIHSDPHKPNKGKVLFGTKFKIKIPSLLPNSPFESKTCANADFGAKAKDSENLGTYRKDSDSLQAVPAATGVMRLSEMELSEEYTCVISHGVNPRTTHIFDNCVVESYFSLPNNQHSAASVHFLNFCYTCKKHLEQTKDIFIYRGEKAFCSQECRHQEMVLDGAEN* 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g1962 285 MobiDBLite consensus disorder prediction 1 35 - -
Lja5g1962 285 MobiDBLite consensus disorder prediction 14 35 - -
Lja5g1962 285 Pfam zinc-finger of the FCS-type, C2-C2 234 282 IPR007650 -
Lja5g1962 285 PANTHER FCS-LIKE ZINC FINGER 8 2 285 IPR044593 -
Lja5g1962 285 PANTHER ZF-FLZ DOMAIN-CONTAINING PROTEIN-RELATED 2 285 - -
Lja5g1962 285 ProSiteProfiles Zinc finger FLZ-type profile. 241 285 IPR007650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g1962 Lja-Chr5 25061811 25063791 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g1962 - - gmx:100811607 332.798
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g1962 5 25061811 25063791 Lja5g1962 5 25061811 25063791 ECH
Lja1g1108 1 11045985 11048523 Lja5g1962 5 25061811 25063791 PCT