Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g1957 ATGGCATTTAGAGGGTTTGTTGTGTGTCTAGTTATGGTCATGGTGGCCACAATGTGGACTCAAAATGCAGCACAATCAGGTTGCACCAGTGCACTCACTAGCTTGAGCCCTTGCCTCAATTACATAACGGGAAGTTCATCATCCCCATCAACTTCATGCTGCTCGCAGCTCTCAAGTGTTGTTCAATCTTCACCGCAGTGCCTCTGCTCCCTCCTTAATGGTGGAGGTTCCTCTTTTGGAATCACAATGAATCAAACTCTTGCTCTGTCTCTCCCTGGCACTTGTAAAGTGCAAACTCCACCTGTTAGCCAGTGCAACGCTGGGAATGGACCAACAACTCCTTCAACTGCTACTGTGGGCTCTCCAATTGGTTCTCCATCTGATTCTTCAGCTGAATCACCTCAAGGCTCAATCACACCTTCTGCTTCAAACTTCCCCTCAGGCACAGGACCAAAAAATGTCCCATCAACAGAAAGTGGCTCATCTGATGGAAGCAATATTAAAGTCCCCTTTCACTTGGTGCTCTGTGTTCTTGCCATTGTGTCTTTGGTCACCAAGTTTTGA 564 0.4716 MAFRGFVVCLVMVMVATMWTQNAAQSGCTSALTSLSPCLNYITGSSSSPSTSCCSQLSSVVQSSPQCLCSLLNGGGSSFGITMNQTLALSLPGTCKVQTPPVSQCNAGNGPTTPSTATVGSPIGSPSDSSAESPQGSITPSASNFPSGTGPKNVPSTESGSSDGSNIKVPFHLVLCVLAIVSLVTKF* 188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g1957 187 PRINTS Plant phospholipid transfer protein signature 82 99 IPR000528 GO:0006869|GO:0008289
Lja5g1957 187 PRINTS Plant phospholipid transfer protein signature 27 43 IPR000528 GO:0006869|GO:0008289
Lja5g1957 187 PRINTS Plant phospholipid transfer protein signature 48 62 IPR000528 GO:0006869|GO:0008289
Lja5g1957 187 SMART aai_6 28 105 IPR016140 -
Lja5g1957 187 Gene3D - 25 105 IPR036312 -
Lja5g1957 187 PANTHER BIFUNCTIONAL INHIBITOR/LIPID-TRANSFER PROTEIN/SEED STORAGE 2S ALBUMIN SUPERFAMILY PROTEIN-RELATED 6 183 IPR043325 -
Lja5g1957 187 SUPERFAMILY Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin 27 107 IPR036312 -
Lja5g1957 187 Pfam Probable lipid transfer 11 105 IPR016140 -
Lja5g1957 187 MobiDBLite consensus disorder prediction 105 163 - -
Lja5g1957 187 PANTHER BIFUNCTIONAL INHIBITOR/LIPID-TRANSFER PROTEIN/SEED STORAGE 2S ALBUMIN SUPERFAMILY PROTEIN 6 183 - -
Lja5g1957 187 CDD AAI_LTSS 35 97 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g1957 Lja-Chr5 24809307 24811201 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g1957 6 187 Lipid Metabolism Gene Families AT3G22600 50.811 6.81e-43 139
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g1957 - - gmx:100306151 271.166
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g1957 5 24809307 24811201 Lja5g1957 5 24809307 24811201 ECH
Lja5g1957 5 24809307 24811201 Lja1g1105 1 11014636 11015550 PCT