Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g1105 ATGGCACCAAGAAGGATTGAAATGCAGCTGAGCACGTTCCTTCTTGTGGTGGTGGCTCTTTGTGTATCCACCACAGTGGCTCAATCTCAATCACCTGAATCAAGTGCTTGCACCGATGTGCTCATAAGCCTCTCTCCCTGCCTTGACTACATAATAGGAAGTGCCTCCACCCCTTCTTCTGGTTGCTGCTCACAACTTTCCTTTGTGGTGAAGTCACAGCCACAGTGTCTTTGTGAAGTTGTTAATGGTGGTGCCTCTTCTATTGCTGCTAGTCTCAACATCAATCAGACTCAGGCTTTGACACTCCCTAGTGCTTGTAACGTGCAGACACCTCCTATTACCACCACCTGCACTGGCTCAGCTTCTTCTTCAACATCCCCAACAGGTGTTTCTGTTTCCAACTTCCCAAATTCCCCATCAGGTACCAAACAAAAGAGAAAGAGTAAATGTTTAATTTCATCCATGAAAGTGAAAATGTAA 480 0.4583 MAPRRIEMQLSTFLLVVVALCVSTTVAQSQSPESSACTDVLISLSPCLDYIIGSASTPSSGCCSQLSFVVKSQPQCLCEVVNGGASSIAASLNINQTQALTLPSACNVQTPPITTTCTGSASSSTSPTGVSVSNFPNSPSGTKQKRKSKCLISSMKVKM* 160
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g1105 159 PRINTS Plant phospholipid transfer protein signature 57 71 IPR000528 GO:0006869|GO:0008289
Lja1g1105 159 PRINTS Plant phospholipid transfer protein signature 93 110 IPR000528 GO:0006869|GO:0008289
Lja1g1105 159 PRINTS Plant phospholipid transfer protein signature 36 52 IPR000528 GO:0006869|GO:0008289
Lja1g1105 159 PANTHER BIFUNCTIONAL INHIBITOR/LIPID-TRANSFER PROTEIN/SEED STORAGE 2S ALBUMIN SUPERFAMILY PROTEIN-RELATED 8 140 IPR043325 -
Lja1g1105 159 SMART aai_6 37 117 IPR016140 -
Lja1g1105 159 Pfam Probable lipid transfer 18 115 IPR016140 -
Lja1g1105 159 PANTHER LIPID TRANSFER PROTEIN 8 140 - -
Lja1g1105 159 MobiDBLite consensus disorder prediction 118 148 - -
Lja1g1105 159 SUPERFAMILY Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin 36 116 IPR036312 -
Lja1g1105 159 CDD AAI_LTSS 44 108 - -
Lja1g1105 159 Gene3D - 33 114 IPR036312 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g1105 Lja-Chr1 11014636 11015550 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g1105 5 114 Lipid Metabolism Gene Families AT3G22600 52.727 1.77e-32 112
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g1105 - - gmx:100801492 174.866
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g1105 1 11014636 11015550 Lja1g1105 1 11014636 11015550 ECH
Lja5g1957 5 24809307 24811201 Lja1g1105 1 11014636 11015550 PCT