Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g1948 ATGGCGAGTCTTCCTCATTCAGGTTCTAGGAGAATGTATTCATGGTGGTGGGACAGCCACATAAGCCCTAAGAACTCAAAATGGCTCCAAGAAAATCTGACAGATATGGATGTCAAGGTGAAGCAAATGATTAAGCTTATTGAAGAAGATGCAGATTCCTTTGCCAGGAGAGCAGAAATGTATTACAAAAAACGCCCAGAGCTTATGAAAATGGTTGAAGAGTTCTACCGGGCATACCGAGCATTGGCTGAGAGATATGATCATGCAACTGGAGTGATCCGCCATGCCCATCGGACAATGTCTGAAGCATTTCCTAATCAACTCCCTATGATGCTGACAGATGATATGCCTGCAGCCGAGCCAAGTACTCCAGATTCGCGCCACCCTTCACGTGCATTTCTTGACCCAGATGAATCGCAAAAGGATGCTGTCAAAAAAAATGGAGATTTAAGTGAAGAATCTAATTCTGCTTTGAACAAAACTGGCTTAAGACAGCTCAATGATCTCCTCATCCCTGGAGAACATGCAAAGTTTGCAGAAGGGCATGCTAGAAGGGGGCTCAATTTTATCGAGACACAGGAGGAGAGCTGTGAGCTAAACAATCTCAGCCATGGCAATAGGGCTCAAGTCTTGTCTGAGTCTGAACGCGTGACAAAAGCGGAGGCAGAAATTTCGGCCTTAAAGAAAGCCCTCGCCAAGTTAGAAAGTGAAAAGGAAGCTGGCTTGCTTCAGTATCAGCAGAGTCTGGAGAGATTGTCTAATCTTGAGTCAGAAGTGTCCAGTGCACAAGAGAATTCTCAAAGACTTGATGAACGAGCAAGTAAAGCGGAAGCTGAAGTTCAAACCTTAAAGGAATCCCTGAACAAATTCGAGGCTGAAAGGGAGGCTAGTCTTCTTCAGTACGAGGGATGCTTAGAGAAAATATCTAATCTGGAGAAAAATATTTCTTCTTCTCAGAAGGACACAGGAGAACTTAATGAACGAGCTAGTAGAGCTGAAACTGAAGCCGAGTCCTTAAAGCAGGATCTTGCTAGGGCAGAAGCTGAGAAGGAAGATGCCCTTGTAAAATATAAACAGTGCTTGGAGACATTATCAAAACTGGAGGAGAGATTAAAAGAAGCTGAGGAGAATTCTAGAAGGATTAATGAGCAAGCTAAGATAGCTGAGAATGAAATTGAGGCTATGAAATTGGAAGTTGCTAAACTTAATGAAGAGAAGGAAGATGCTGCTCTCCGCTATGAGCAATCGTTAGAGATCATTTCCAGTTTGGAGCATAAACTCTCTTGTGCTGAAGAGGAGGTGCGCAGGCTTAATTCCAAGATAGATGATGAGGTTGAAAAGTTACATAGTTCTGAACAGAAGTGTCTTGTTTTGGAAACATCAAATCACACCCTGCAATCTGAATTACAATCTTTGGCACAAAGGATAGGGTTTCAAACTGAAGAACTTAATGAGAAGCAGAAGGAATTGGGTAGACTTTGGAGTTGTATACAAGAGGAGAGATCACGTTTCATTGAGGCTGAAACTGCTTTCCAAACACTTCAGCAATTGCATTCTCAATCTCAGGCTGACCTTAGATCTCTCGCTGCTGATCTTCACGGTAAAGAGGAAATACTGGGGAGTGTGGAATCACATAAGAAGGCTTTAGAGGATGAAGTATGCAGGGTCCATGAAGAAAACAAAATTTTGAATGAGCTCAAAATTTCTTCATCTTTGTCTATAGAAAATTTGCAGGATGAGATATCGAATTTGAAGAAGACAATTGAGAAACTTGAACAGGAGGTTGAGCTGCGACTAGATGAAAGAAACGCTCTTCAGCAAGAAATTTACTGTCTTAAAGAGGAGCTAAATGATCTCAATAAAAAACATGAAGCTGTGATGGGGGAGGTCATGTCAACTGACTTAGACCCTCAGTGCTTTGGCTCATCTGTAAAAAAATTGCAAGACGAGAACTCGAACCTGAGGGAGACGTGTGAGGCTGAAAAAGATGAGAAAGAAGCTCTTCTGGTAAAACTGGAAGCCATGGGGAAACTTTTGGAGAAAAATACTGTTTTGGAGAATTCCCTTTCAGACATGAATGCTGAACTGGACAGTGTAAGAGGAAAGGTGAATGTCTTGGAAGAAACATGTCAATCCTTGCTTGTGGAGAAATCAACTCTTGCTGCTGAGAAAGCCTCCTTGTTTTCTCAGTTACAAGACACAACTGAAAATCTGGAGAAGCTCTCAGAAAAGAACAAGCTTCTCGAAAATTCACTATTTGATGTGAATGCTGAGCTTGAAGGATTAAGGGCAAAGTCCAAGACCTTAGAAGAACAATGCCAGTTACTTGACCATGATAAGTCCTGCATCTTTTCAGAGAAAGAAACCTTAGTTTCACAGTTGAACTCCACTCATCAAATGCTGACAAGTCTCGAGAAACAACACAGTGAATTGGAACTACAGCATTTGGAACTAAAAGGAGAAAGGGAGTCGTCTCTTAAAAAGGTAGAAGAGCTACTGGTTTCCTTATATTCCCAAAGGGAAGAGCATTGCAGGGTTTTGAAATTGAATGAAGATGAACTGGCAAAGAAAGGATCAGAAATTTGTATTCTACAAGAAGAAGCAAATTGCCAGAGAATAGAATACGAGGAGGAACTAGACCGAGCTATGCATGCTCAAATTGAAATTTTCATCCTGCAGAAGTGTATCCATGATTTGGAGAAAAAGAACTTTTCTCTTCTAGTTGAGTGTCAGAGACTTTTGGAGGCATCCAAAATGTCCGACAGAATGATATCGAAACTGGAGACTGGAAATCTTCAAAAGCAGGTTGATGTGAATTCTTTGTCTGAGAAAATTAGAATACTAAAGATTGGTCTGCTTCAGGTGCTGAAGACTATTGACATTGACGGTGAGCATTTCTTTGAAGATATGCTTGACGAAGACCAGATTCTTCTGAATCGTATACAAGGAAAACTCCAGGAGAGACAGAAGTCTTTTGACAAAATTTTCAACGAAAGCCAGCATATGGCCATTGAGAATTCAGTTCTGATCACATACCTTGGGCAGTTGAAACTAAAGGTGGAGAATCTTGTGACACCCCTTGATGAGGAGTTCAGGATACAGTCTATGCAATTCTTGGCATTGCAAGTAGAGGTCCAAAAGATATTGGAGAAGAATCAGGAGTTGGAGTTGACAGTAAGAAAAGGAGAAGAGAGAGCAGAAGTAATGACGATTGAAATAGACAATCTACGCGAACAGCTATCTGACATGGAAAAGAGTCACAACAACTTACAGGAAGAAAGGAGCATTGTGCTTGATGAGAAGAAGTCCTTGATGAGTAGATTTCTAGATCTGGGTGAAGAGAAGAATAGCTTGGAAAAAGAAATTTGTGCTGTGATCCACGAGACAATAGCTCAATCTAATATTTCTCTGATTTACCAGAATATTATCTTTGAAAAACTCCTGGAACTTAAAGAGCGAGGTGAAGATCTTGGTAAACTTTGTTCAGTAAATAATAACCTTGAGGAGAGATTAAAGACAATGGTGCGCAACTTGGAAAATTCAGAGAGGGAAAATTCACATCTTAAAGAGTCATATATAAAGTCGCATGTTGAATTAAATTTAGTCAAATCTGTCAATGATCTGTTGAGCTGTGAGGTTAGGAATGAAAGGGAAATGTTGTGTCAGAAGAAAAATGAGCTTATGGAAGCAGCTGAGATGTTTCATACTTTACACACTGACAAAACAGAATTGCAAAGGATTGTGGAAGATATGAAGATAAAGTATGATGAGGCCATGGTCATACTTGATGAACAGGCTAATCAAATTTTCAAATTGTCCTCAGACAAGGATCGTCAAAATGAGGAGCTTGGATGCCTTTCTGAAGTGAATAAGAAGTTGGAAGCTGAAATGAAGCACCTACATCAAGAACTTGGAGAAACTAAACTGAGGGAAATAAATCTAAGCGATGAAGTGCATAAGGGAATGAGTGAGATTGAACAATGGGAAACTCAGGCTTCAGAACTCTATGCCGAACTGCAAATTTCTGCTGTCAACGAAACATTATTTGAGGGGAAGGTCTGTGAGCTAGCTGATGCATGTGAGAATCTTGAACGCAACAACTACTCCAAAGACATGGAAAGTGAACAGCTGAAAGACAGGGTTAGGAATGAAAGGGAAATGTTGTGTCAGAAGAAAAATGAGCTTTTGGAAGCAGCTGAGATGTTTCGTACTTTACACACTGAGAAAACAGAATTGCAAAGGATTGTGGAAGATCTGAAGATAAAGTATGATGAGGCCATGGGCATACATGAGGAACAGGCTAATCAAATTTTCAAATTGTCCTCAGACAAGGATCGTCAAAATGAGGAGCTTGGATGCCTTTCTGAAGTGAATAAGAAGTTGGAAGCTGAAATGAAGCACCTACATCAAGAACTTGGAGAAACTAAACTGAGGGAAAAGAATCTAAGCGATGAAGTGGATAAGGTAATGAGTGAGATTGAACAATGGGAAACTCAGGCTTCAGCACTCTATGCCGAACTGCAAATTTCTGCTGTCAACGAAACATTATTTGAGCGAAAGGTCTGTGAGCTAGCTGATGCTTGTGAGAATCTTGAACGCAACAACTACTCCAAAGACATGGAAAGTGAACAGCTGAAAGACAGAGTTAGCAAATTGGAAGATCAAAATGGAAGACTGTGTGATCAATTAGCTGCTTATTTCCCCGCTGTAAGTGCCTTGAATGATTGTATAACATCTCTGGAAATGCAGACTGTCGAACATGCAAAACCTCGTGACTGTGAAGAACCAAAGGTTGAAATTTTGGTGAATGATGAATACACTGAGAATGGTAAACAAACAGGGGATGATCAGACTGTTAAGGCACGGGATGCAGTCCCTGACTTCCAAGACATGCAGAGAAGGATCAATGCAATTGCAGTGTCAGTTAAGCAGTTAAATGCAAGTTTCAAATCGAAGGATGAGATGAGAGAGATTCAAGAGTCAAACAAGATGGGGAAATCAAGGTTGGATGTTCCTGTATCAGAGATTGAAGAGCTGCCAAAAGATATCATGCTTGATCAAATATCTGAATGTTCATCATATAGGAGAGAAACTCTTGATTCTGATGATCAGAAGATGCTGGAGTTGTGGGAAACACCTCACAAAGATGGCAGTGTTGACCTGCAAGTTACGCAAAAGATGGCAACCAAGGAACCTAGAAGTAAACATCCTTCAGCAGAGTCCTTAGTGGAAAAGGAGTTGAGTGTGGACAAATTAGAGATCTCAAGAAGATTGACGCAGCCACGCGAAGAAGGCAACAAGAGCAAGATTTTCAAGAGACTCGATTCTGATGCACAGAAGTTAACAAATCTTCAAATAACGATTCAGGATTTGATGAAGAAGGTGGAGTTTTCTGAGAAGAGCACAAAAGGAAAAGGCGTCGAGTATGATACGGTGAAAGGGCAGCTTGAAGCTGCTCAGGAGACAACCACAAAGCTGTTCGACGCGAACCGCGAGCTGATGAAGAATGTAGAAGAGGGTGCATTGTCTTCTGATGAGAATGGAAGTATCAGCAGAAGGAGAGCTTCGGAACAGGCGCGGACCGGAGCAGAAAAAATAGGTCAACTTCAGTTGGAGGTGCAAAGGCTGCAGTTTCTGCTTCTGAAGCTGGATGATGGAAAAGCAAGCAAGGAGAAAACTAGAGTGAGTGATCGAAGTCCAAGAGTACTTTTGAGGGATTATCTCTATGGGAGAACTAACAACCAAAAGAAGAAAAGAGCATCTTTTTGTGCATGCGTCAAACCTCCCACCAAGGGAGATTGA 5802 0.4111 MASLPHSGSRRMYSWWWDSHISPKNSKWLQENLTDMDVKVKQMIKLIEEDADSFARRAEMYYKKRPELMKMVEEFYRAYRALAERYDHATGVIRHAHRTMSEAFPNQLPMMLTDDMPAAEPSTPDSRHPSRAFLDPDESQKDAVKKNGDLSEESNSALNKTGLRQLNDLLIPGEHAKFAEGHARRGLNFIETQEESCELNNLSHGNRAQVLSESERVTKAEAEISALKKALAKLESEKEAGLLQYQQSLERLSNLESEVSSAQENSQRLDERASKAEAEVQTLKESLNKFEAEREASLLQYEGCLEKISNLEKNISSSQKDTGELNERASRAETEAESLKQDLARAEAEKEDALVKYKQCLETLSKLEERLKEAEENSRRINEQAKIAENEIEAMKLEVAKLNEEKEDAALRYEQSLEIISSLEHKLSCAEEEVRRLNSKIDDEVEKLHSSEQKCLVLETSNHTLQSELQSLAQRIGFQTEELNEKQKELGRLWSCIQEERSRFIEAETAFQTLQQLHSQSQADLRSLAADLHGKEEILGSVESHKKALEDEVCRVHEENKILNELKISSSLSIENLQDEISNLKKTIEKLEQEVELRLDERNALQQEIYCLKEELNDLNKKHEAVMGEVMSTDLDPQCFGSSVKKLQDENSNLRETCEAEKDEKEALLVKLEAMGKLLEKNTVLENSLSDMNAELDSVRGKVNVLEETCQSLLVEKSTLAAEKASLFSQLQDTTENLEKLSEKNKLLENSLFDVNAELEGLRAKSKTLEEQCQLLDHDKSCIFSEKETLVSQLNSTHQMLTSLEKQHSELELQHLELKGERESSLKKVEELLVSLYSQREEHCRVLKLNEDELAKKGSEICILQEEANCQRIEYEEELDRAMHAQIEIFILQKCIHDLEKKNFSLLVECQRLLEASKMSDRMISKLETGNLQKQVDVNSLSEKIRILKIGLLQVLKTIDIDGEHFFEDMLDEDQILLNRIQGKLQERQKSFDKIFNESQHMAIENSVLITYLGQLKLKVENLVTPLDEEFRIQSMQFLALQVEVQKILEKNQELELTVRKGEERAEVMTIEIDNLREQLSDMEKSHNNLQEERSIVLDEKKSLMSRFLDLGEEKNSLEKEICAVIHETIAQSNISLIYQNIIFEKLLELKERGEDLGKLCSVNNNLEERLKTMVRNLENSERENSHLKESYIKSHVELNLVKSVNDLLSCEVRNEREMLCQKKNELMEAAEMFHTLHTDKTELQRIVEDMKIKYDEAMVILDEQANQIFKLSSDKDRQNEELGCLSEVNKKLEAEMKHLHQELGETKLREINLSDEVHKGMSEIEQWETQASELYAELQISAVNETLFEGKVCELADACENLERNNYSKDMESEQLKDRVRNEREMLCQKKNELLEAAEMFRTLHTEKTELQRIVEDLKIKYDEAMGIHEEQANQIFKLSSDKDRQNEELGCLSEVNKKLEAEMKHLHQELGETKLREKNLSDEVDKVMSEIEQWETQASALYAELQISAVNETLFERKVCELADACENLERNNYSKDMESEQLKDRVSKLEDQNGRLCDQLAAYFPAVSALNDCITSLEMQTVEHAKPRDCEEPKVEILVNDEYTENGKQTGDDQTVKARDAVPDFQDMQRRINAIAVSVKQLNASFKSKDEMREIQESNKMGKSRLDVPVSEIEELPKDIMLDQISECSSYRRETLDSDDQKMLELWETPHKDGSVDLQVTQKMATKEPRSKHPSAESLVEKELSVDKLEISRRLTQPREEGNKSKIFKRLDSDAQKLTNLQITIQDLMKKVEFSEKSTKGKGVEYDTVKGQLEAAQETTTKLFDANRELMKNVEEGALSSDENGSISRRRASEQARTGAEKIGQLQLEVQRLQFLLLKLDDGKASKEKTRVSDRSPRVLLRDYLYGRTNNQKKKRASFCACVKPPTKGD* 1934
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g1948 1933 Coils Coil 689 709 - -
Lja5g1948 1933 Coils Coil 1262 1310 - -
Lja5g1948 1933 PANTHER PROTEIN NETWORKED 4A 1381 1933 - -
Lja5g1948 1933 PANTHER PROTEIN NETWORKED 4A 1 1382 - -
Lja5g1948 1933 Coils Coil 1444 1506 - -
Lja5g1948 1933 Coils Coil 644 675 - -
Lja5g1948 1933 Coils Coil 724 779 - -
Lja5g1948 1933 Gene3D - 519 684 - -
Lja5g1948 1933 Gene3D - 214 387 - -
Lja5g1948 1933 Coils Coil 1164 1191 - -
Lja5g1948 1933 Coils Coil 1542 1562 - -
Lja5g1948 1933 MobiDBLite consensus disorder prediction 130 149 - -
Lja5g1948 1933 MobiDBLite consensus disorder prediction 317 336 - -
Lja5g1948 1933 PANTHER KINASE INTERACTING (KIP1-LIKE) FAMILY PROTEIN 1381 1933 - -
Lja5g1948 1933 SUPERFAMILY Tropomyosin 389 630 - -
Lja5g1948 1933 SUPERFAMILY Tropomyosin 214 426 - -
Lja5g1948 1933 Coils Coil 1045 1100 - -
Lja5g1948 1933 MobiDBLite consensus disorder prediction 256 276 - -
Lja5g1948 1933 PANTHER KINASE INTERACTING (KIP1-LIKE) FAMILY PROTEIN 1 1382 - -
Lja5g1948 1933 MobiDBLite consensus disorder prediction 1839 1861 - -
Lja5g1948 1933 Coils Coil 469 489 - -
Lja5g1948 1933 Coils Coil 574 622 - -
Lja5g1948 1933 Coils Coil 217 300 - -
Lja5g1948 1933 Coils Coil 1378 1398 - -
Lja5g1948 1933 Coils Coil 794 821 - -
Lja5g1948 1933 Coils Coil 1781 1801 - -
Lja5g1948 1933 ProSiteProfiles Networked (NET) actin-binding (NAB) domain profile. 13 93 IPR011684 GO:0003779
Lja5g1948 1933 Coils Coil 308 454 - -
Lja5g1948 1933 MobiDBLite consensus disorder prediction 113 156 - -
Lja5g1948 1933 Pfam KIP1-like protein 14 87 IPR011684 GO:0003779
Lja5g1948 1933 Coils Coil 865 885 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g1948 Lja-Chr5 24407249 24416218 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g1948 - - gmx:100782563 2710.25
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g1948 5 24407249 24416218 Lja5g1948 5 24407249 24416218 ECH
Lja1g1100 1 10976398 10983698 Lja5g1948 5 24407249 24416218 PCT