Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g1100 ATGGCGGCTCTGTCCCATTCTGACTCTAAGAGAATGTACTCATGGTGGTGGGACAGCCACATAAGCCCCAAAAACTCAAAATGGCTCCAAGAAAATCTCACAGATATGGATTCCAAAGTGAAGCAAATGATCAAGCTCATTGAAGAAGATGCAGATTCCTTTGCCAGGAGGGCAGAAATGTACTACAAGAAGCGCCCTGAGCTCATGAAATTGGTTGAAGAGTTTTACCGGGCGTATCGGGCGTTGGCTGAGAGATACGATCACGCAACCGGAGTGATACGCCAGGCCCATCATACCATGGCTGAAGCATTTCCTAATCAAGTCCCTCTGATGGTAGCAGATGATTTACCTGCAGTTTCTTCCATGGAGACTGAACCGCATACGCCGCATATACCCCACAATTCACATGCATTTCTTGACTCAGATGATCTGCAAAAGGGTGCTTCTACTCATTTCCATGCTATCAAAAGAAATGGACCTTATACTGATGAACCTGATTCTACTGCATACAGAAAGGGCTTGAAACAGCTCAATGATCTCTTCATGTTAAGAGAACAATTAAGTCATGCAAAGTTCGCAGAAGGACGCGCTAGAAGGGGACTCAATTTTCATGACACAGAGGAGAATAATGGGGTAAACAATGGAAGCCATGATACTGAACCTCAAATCTTATCTGAGTCTGAACGGATGACTAATGCTGAGACAGAAATCTTGGCCTTGAAGAAAGCCCTTGCTAGATTAGAAAGTGAAAAGGAAGCTGGCTTGTTTCAATATCAAGAGAGTTTGGAGAGGTTGTGTAACCTGGAATCAGAAATGTCTCGCGCCAGAGAGAATTCTCAAGGACTTGATGAACGAGCAAGCAAAGCTGAAGCTGAAGTTCAAACCTTGAAGGAAGCCCTTACTGAATTACAGGCTGAAAGAGAAGCTAGTCTTCTTCGGTACCAGCAATGCTTGGAGAAAACATGTGATCTGGAGAAAAATATTTCTTCTGCTCAAAAGGATATAGGAGAACTCAATGAGCGAGCTAGTAAAGCTGAAACTGAAGCTGAATCCTTAAAGCAAAACCTTGCTAGGGTGGAAACTCAAAAGGAAGCTGCTCTTTTTCAGTATAACCAGTCCTTGGAGATATTATCAAAACTGGAGGAGAGATTAGTACAAGCTGAGGAGAACGCGATGAGAATTAACGCTGAAGCTAATATAGCTAAAAATGAAATTGAGGACATGAAGTTAGAAATCAGTAAACTTACTGAAGAGAAGGAAGACGCAGCTCTTCGATATCAGCAATGCTTGGAGATAATTTCCAGTTTGGAGCATAAACTCTCTTGTGCTGAAGAGGAGGTGAATAGGCTAAATTGCAAGATAAATGATGGGGTTGAAAAGTTGAATAGTTCTGAACAAAAGTGTCATCTCTTTGAAACATCAAATCAGACCCTCCAATCTGAATTGCAGGCTTTAACACAGAAGATGGGATCTCAAAGTGAAGAGCTCTGTGAGAAGCAGAAGGAATTGGGTAGACTTTGGACTTGCATACAGGAGGAGAGATTGCGATTTGTTGAGGCCGAAACTGCTTTCCAAACTCTTCAGAATCTGCATTCCCAATCTCAGGAAGAGCTTAGATCTCTTGCTGCTGAGCTTCATAATAAGGCTGAAATTCTGGAGAATATGGAATCCCATAAGAAGGCTTTAGAGGATGAAGTACACAAGGCCAAGGAGGAAAACAAAATTCTAAATGAGATCAAATTGTCTTCTTCTTTGTCTATAAAAAGTTTGCAGGATGAGATATTGAATCTAAGGGAGACAATAGAGAAACTTGAACTGGAGGTTGGAGTGCGAGCAGATGAACGAAATGCTCTTCAACAAGAAATTTACTGTCTTAAAGAGGAGCTTAATGATGTGAAAAAGAGACATGAATCCATGATGGAGGAGGTCGGATCAACCGGCTTAGACGCACAGTGCTTTGCCTTATCTGTGAAGAAATTACAAGATGAGAACTCAAAGCTGAAGGAAATATGCGAGGCTGACAAAGGTGAGAAAGCAGAACTGCAGGAAAAACTGGAGATCATGGAGAAACTTTTGGAGAAAAATGCTGTTTTGGAGAGTTCCCTTTCAGGTTTGAATTCCGAGCTGGAGTGTGTTAGAGAAAAGGTAAAGTTACTGGAAGAAATTTGTGAATCTTTGCTTGTGGAGAAATCTACTCTCGCTGCTGAGAAGGCCGCCTTGTTTCTTCAGTTGCAAACCTCAGCTGAAAATCTGGAGAAGCTCTCAGAAAAAAACCACCTTTTAGAAAAATCACTTTTTGATGTGAATGCAGAGCTCGAAGGATTAAGGACAAAGTCAAAGATTTTAGAAGACTCATGCCTGTTGCTTGACCGTGAGAAGTCCAGTCTCACTTCTGAGAAACAAACCTTAGATTCACAATTGGACATCACTCGCCAAACACTGAAAGACCTTGAGAAACAACATAGTGAATTGGAACTAAAGCATTCAGAACTAAAAGCAGAAAGGAAGTCTGCACTTCAAAAGGTGGAAGAGCTACTTGTTTCCTTGTATGCTGAGAGGGAAGCGCATTCTAGAATTGTGGAGTTGAATGAAGTTCACTTGGTTGAGAAGGAATTGCAAATTCATATTCTGCAAGAAGATGTAAATTACCAGGAAAAGGAATATGAGGAGGAACTCGACAGAGCTGTACATGCTCAAATGGAAATTTTCATCTTGCAGAAGTCTATCTGGGATTCGGAGCAAAAGAACTTCTCCCTTCTTGTTGAGTGTCAGAGACTCTTGGAGGCATCCAAAATGTCTGATAGATTGATATCGAAATTGGAGAACGACAATGTTCAAAAGCAAGTTGATGCAAATTTCTTGTCTGAGAAAGTGAGAATTCTAAGGATTGGACTTCTTCAGGTGTTAAATACTCTTGACATTGACAGAAAGCACTGGAGTGAAGATATTATTGAAGAAGACCAGGAACTTCTAAACCATATACATGGCAAACTTCAGGAGACACAGAATTCTTTTGTCACTATTTTCAATGAAAGCCAGCAAGTGGCTATTGAGAATTCAGTTCTGGTTACATTCCTTGGGCAGTTGAAACTAGAGGCTGAAAGTATTGTAACAGAAAGAAATGCCCTTGATGAGGAGTTTGGCACCCAGTCGAAGCAGTTCTTGTCATTGCAAGCAGAGGTGCAAAAGATACGGCAGAAGAATCAGGAATTGAAGTTGACAATAAGAAAGAGAGATGAGAAAATGGAAATAATGACAACAGAAATAGAGAATCTCTGCAAACAGTTTTCAGACTTGGATGAGGCTTACAGGATCATACAGGAAGAAAGTTACAAAACTTCTGAAGAGAAAAAGTCCTTGATGAGAAGATATAAAGACCTGGCTGAAGAGAAAGGTAACTTGGAAGAAGAAATGTGCAGCATGATTCATGAGACAATAGCTCCGTGTAATAGTTCTCTGATCTACCAGAACATTGTCTTTGAAAAACTTCTGGCACTTAAAGAGCTAGGCAAAGATCTGGACAAACTGTTATCAGTAAATACAGGCCTTGAGGAGAGGTTACAAATAGTGACAGGGAAATTAGAGGATGTTCAAATGGATAATTCTTATCTTAAGGAATCAGTTGCAGAGTTGAATACTGATCTGAAATTAGTTCAGTCTGTCAATGATGAATTAAATTGTCAGATTAAGAATGGAAAGGAATTGTTATCTCGAAAGGAAAATGAGATTATGAAAGCAGCGGAGATGTTTAGTGCTTTATATGGTGAGAAAACAGAATTTCAAAGGTTGGTTGAAGATCTGAAGAAAAAGTATGATGAGGCTAGAGTGATAATTGAAGACCAAGCTAGTCAAATTTTAAAATTATACTCAGACAAGGATCGTCAAAATGAAGAGCTTGGAAGCCTTTGTGAAGTGAATCAGAAGTTAGAGGCTGAAATGAAACACCTGCATCAAGAACTTGGAGAAACTAAACTGATTGTAGAGAAGCTAAGTTATGAATCACTCAAGGGAACAAATGAGATTGAACGGTGGGAATCTCAGGCTGCCACACTCTATACTGGACTGCAGATTTCTGCTGTCAATGAGACGTTATTTGAAGGAAAGGTCCGTGAGCTCGCTGATGTATGTGAGGATGTTGAACGCAGAAGCAGCTTTCAAGGTATGGAAACTGAAAATCTGAAAGAAAGAGTTAACAAGTTGGAAGGTGAGAATGGGAGACTACGTGGTCAGTTTGCTGCTTATGTCCCATCTGTCTGTGCTTTGAATGATTGTATAACATCCTTGGAGATGCAGATATATGCAAAACCTCATCACTACCAAGAATCAAAGGTTAAGAATTTAGCCAATCACAAATATGCTGAAGGTGATCCACCAGCAGGTGAAGATCAATATGATACTGCAACAGATGCACTTCCAGACTTCCAAGACATGCAGAGAAGGATCAATGCCATCGGAATGGCTGTTAAGCAGATGAATGGAAGTTTCAAACCGAGGGACGAGATGAGAGAGATTCAAGTGTTAAAATCTGGAATCAGCTGGGGTCAAGGAAATACTCAAGCAAGTAAGAATCTTACTCAAATGGAGGCAGCAAAGGAGCATCAAGGTGGGGGTGCTGACAAACAGAAGAGAGGAAAATCAGTGACAGATATTCCTGTAGCAGAAATTGAAGTTTTGCCAAAAGACATCATGCTTGATCAAACCTCTGAATATTCATCATATGGAATAAGTAGGAGAAGGCTTCTGAAGTCTGATGATCAGATGCTTGAACTGTGGGAAACTGCTGATAAGGATGACAATATTGACCTGACAGTAGGCAAGGCATGCCATCAAAGGAGAGCAACCAAGGAAGCCAAAAACAAAAATTCTTCAGTAGGGTCCTTGATTGAAATGGAGTTGAGTGTGGACAAATTAGAGATCTCAAGAAGATTGACACAGCCACCGTCACATGAAGAAGGCAATAAGAGGAAGATTTTGGAAAGACTTGATTCTGATGCCCAGAAGTTGACAAACCTTGAAATAACTGTGCAAGATCTGATGACCAAGATGGACATTATTGAGAAGAGCACAAAGGGAAAAGGTATAGAGTATGATACAGTGCAAGGGCAGCTTGAAGCTGCTCAGGAGGCCATTACAAAGTTGTTTGATGCCAACCGTAAGTTGATGAAGAATGTAGAAGAGGGTACCTCGTCCTCTGCCGGCAAGTCTATCACAGAGTCAGGTGAGAGTGGAAGCTCCAGCAGAAGGAGAGTTTCAGAACAGGCCCGGAGAGGTTCTGAAAAAATAGGGCGGCTGCAGTTGGAGGTACAAAGACTGCAATTTTTACTACTAAAGTTGAATGGCGGTGATAAAGAAGGCAAAGGAAAAGCAACAGTCGATGATCAAAATCCAAGAGTCCTTTTGCGAGATTATCTCTACGGAGGGAGGAGAAAAGACTACCACAAGAAGAAGAAGAAAACATCCTTTTGTGCATGCATGGAGCCTCCCACTAAGGGACATTGA 5499 0.4101 MAALSHSDSKRMYSWWWDSHISPKNSKWLQENLTDMDSKVKQMIKLIEEDADSFARRAEMYYKKRPELMKLVEEFYRAYRALAERYDHATGVIRQAHHTMAEAFPNQVPLMVADDLPAVSSMETEPHTPHIPHNSHAFLDSDDLQKGASTHFHAIKRNGPYTDEPDSTAYRKGLKQLNDLFMLREQLSHAKFAEGRARRGLNFHDTEENNGVNNGSHDTEPQILSESERMTNAETEILALKKALARLESEKEAGLFQYQESLERLCNLESEMSRARENSQGLDERASKAEAEVQTLKEALTELQAEREASLLRYQQCLEKTCDLEKNISSAQKDIGELNERASKAETEAESLKQNLARVETQKEAALFQYNQSLEILSKLEERLVQAEENAMRINAEANIAKNEIEDMKLEISKLTEEKEDAALRYQQCLEIISSLEHKLSCAEEEVNRLNCKINDGVEKLNSSEQKCHLFETSNQTLQSELQALTQKMGSQSEELCEKQKELGRLWTCIQEERLRFVEAETAFQTLQNLHSQSQEELRSLAAELHNKAEILENMESHKKALEDEVHKAKEENKILNEIKLSSSLSIKSLQDEILNLRETIEKLELEVGVRADERNALQQEIYCLKEELNDVKKRHESMMEEVGSTGLDAQCFALSVKKLQDENSKLKEICEADKGEKAELQEKLEIMEKLLEKNAVLESSLSGLNSELECVREKVKLLEEICESLLVEKSTLAAEKAALFLQLQTSAENLEKLSEKNHLLEKSLFDVNAELEGLRTKSKILEDSCLLLDREKSSLTSEKQTLDSQLDITRQTLKDLEKQHSELELKHSELKAERKSALQKVEELLVSLYAEREAHSRIVELNEVHLVEKELQIHILQEDVNYQEKEYEEELDRAVHAQMEIFILQKSIWDSEQKNFSLLVECQRLLEASKMSDRLISKLENDNVQKQVDANFLSEKVRILRIGLLQVLNTLDIDRKHWSEDIIEEDQELLNHIHGKLQETQNSFVTIFNESQQVAIENSVLVTFLGQLKLEAESIVTERNALDEEFGTQSKQFLSLQAEVQKIRQKNQELKLTIRKRDEKMEIMTTEIENLCKQFSDLDEAYRIIQEESYKTSEEKKSLMRRYKDLAEEKGNLEEEMCSMIHETIAPCNSSLIYQNIVFEKLLALKELGKDLDKLLSVNTGLEERLQIVTGKLEDVQMDNSYLKESVAELNTDLKLVQSVNDELNCQIKNGKELLSRKENEIMKAAEMFSALYGEKTEFQRLVEDLKKKYDEARVIIEDQASQILKLYSDKDRQNEELGSLCEVNQKLEAEMKHLHQELGETKLIVEKLSYESLKGTNEIERWESQAATLYTGLQISAVNETLFEGKVRELADVCEDVERRSSFQGMETENLKERVNKLEGENGRLRGQFAAYVPSVCALNDCITSLEMQIYAKPHHYQESKVKNLANHKYAEGDPPAGEDQYDTATDALPDFQDMQRRINAIGMAVKQMNGSFKPRDEMREIQVLKSGISWGQGNTQASKNLTQMEAAKEHQGGGADKQKRGKSVTDIPVAEIEVLPKDIMLDQTSEYSSYGISRRRLLKSDDQMLELWETADKDDNIDLTVGKACHQRRATKEAKNKNSSVGSLIEMELSVDKLEISRRLTQPPSHEEGNKRKILERLDSDAQKLTNLEITVQDLMTKMDIIEKSTKGKGIEYDTVQGQLEAAQEAITKLFDANRKLMKNVEEGTSSSAGKSITESGESGSSSRRRVSEQARRGSEKIGRLQLEVQRLQFLLLKLNGGDKEGKGKATVDDQNPRVLLRDYLYGGRRKDYHKKKKKTSFCACMEPPTKGH* 1833
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g1100 1832 Coils Coil 1264 1284 - -
Lja1g1100 1832 Coils Coil 744 771 - -
Lja1g1100 1832 Coils Coil 1166 1186 - -
Lja1g1100 1832 Coils Coil 1703 1723 - -
Lja1g1100 1832 Coils Coil 328 460 - -
Lja1g1100 1832 PANTHER PROTEIN NETWORKED 4A 1 1831 - -
Lja1g1100 1832 Coils Coil 1117 1137 - -
Lja1g1100 1832 Coils Coil 1292 1326 - -
Lja1g1100 1832 Coils Coil 800 848 - -
Lja1g1100 1832 MobiDBLite consensus disorder prediction 1527 1546 - -
Lja1g1100 1832 MobiDBLite consensus disorder prediction 1725 1759 - -
Lja1g1100 1832 Coils Coil 524 579 - -
Lja1g1100 1832 Coils Coil 1390 1410 - -
Lja1g1100 1832 Coils Coil 657 729 - -
Lja1g1100 1832 Coils Coil 1054 1081 - -
Lja1g1100 1832 Coils Coil 272 313 - -
Lja1g1100 1832 Coils Coil 230 250 - -
Lja1g1100 1832 ProSiteProfiles Networked (NET) actin-binding (NAB) domain profile. 13 93 IPR011684 GO:0003779
Lja1g1100 1832 Coils Coil 1026 1046 - -
Lja1g1100 1832 Coils Coil 1208 1242 - -
Lja1g1100 1832 PANTHER KINASE INTERACTING (KIP1-LIKE) FAMILY PROTEIN 1 1831 - -
Lja1g1100 1832 Coils Coil 587 642 - -
Lja1g1100 1832 MobiDBLite consensus disorder prediction 1725 1747 - -
Lja1g1100 1832 Pfam KIP1-like protein 14 87 IPR011684 GO:0003779
Lja1g1100 1832 SUPERFAMILY Tropomyosin 407 646 - -
Lja1g1100 1832 Coils Coil 937 957 - -
Lja1g1100 1832 Coils Coil 475 495 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g1100 Lja-Chr1 10976398 10983698 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g1100 - - gmx:100810726 2652.86
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g1100 1 10976398 10983698 Lja1g1100 1 10976398 10983698 ECH
Lja1g1100 1 10976398 10983698 Lja5g1948 5 24407249 24416218 PCT