Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g1943 ATGGATCCAAAGCTCACAATCAACTGTCACCGAAATGAGTTCCTTCCAACTAGTGCAGGCACTCAATTGCCAGAAAGCCCCAGAATACCAATGGAGTTTCTGTCAAGGTCATGGAGTGCCTCTGCTCTTGAGGTCTCTAAAGCCCTGAGACCACCTCAACCACACACACCACCTTCTTGCATAGCTTCCAAGCCTTCTAATGCTTCCTCTTGTCTCACTAATTCTATTCCTGAAGAAACTACTTACCATTCAGAGGAGTCCTCAACAATGTGTGGGAATCAGTTCTCTTTTGCTTCCTCTGCTACTTCACAGTTTGTCCTTGAGCGCATCATGTCACAGTCCACAAGAGAGGAAGTGTCTCCATTAACATCAGGTAGACTGTCCCACAGCAGTGAACCTGTGAACGGTGGTGGTGGTTCTTTAACCGGAACAGATAGTCCTCCAATTTCTCCATCTGAGGAGTACGACGATGTTGTTAAGTTTTTCCGAGCAAACAATTCTATTCACCCCTTATTCAATGGTGGACGAGCTATGATTATGAGTACTGCTACTACTGGTAATGCCACTCCTTGCTCTGGACCTAAAACAGTTGGAAGATGGTTGAAAGAGAGAAGAGAAAAGAAGAAGGAAGAAAACAGGAGCCACAATGCTCAGCTGCACGCAGCTATTTCTGTGGCTGCTGTGGCGGCTGCGGTTGCCGCCATCACGGCTGCAACAGCAGCCTCATCTAGCAAAGATGAGAAGATGGCTAATACAGACATGGCTGTGGCTTCTGCAGCTACTTTGGTTGCTGCTCAGTGTGTAGAAGCTGCTGAAGCAATGGGAGCTGAAAGAGACCACCTTGCTTCTGTGATTAGCTCTGCTGTGAATGTTAGATCTCATGATGATATCACAACTCTAACTGCTGCTGCTGCCACAGCTCTAAGAGGGGCAGCAACTTTGAAAGCAAGAGCATTGAAGGAGATGAGGAATATTACTGCAGTGACACCACTAGAGAGAAGCATAGGGATTGGAGTGTGTGGTAAAGCAAAAAACAGTAACTCTAGCACCAGTGATAGTGGAGAGATTATCAATGGAGAAAATTTTCTAGGTGCCTGCAACCTTGAGCTTCTTGCCAGGGGAAGTGAATTACTCAAACGGACCCGTAAAGGTGATCTTCACTGGAAAGTGGTTTCTGTTTATATACATCGATCAGGCCAGGTGATGCTGAAAACGAAAAGCAAGCATGTTGCAGGAACCATTACTAAAAAGAAAAAGGATGTTGTGTTAGATGTGAGCACAAATTTACCAGCATGGCCAGGAAGGCATCTTTTTGATGATGGTGAAAAAAGAAGGTATTTCGGATTGAAGACAGAGTCATGGGGGGTTGTGGAGTTTGAATGTAGAAATCAAAGAGAATATGATATCTGGACTCAAGGTGTTTCAAGACTTCTTTCCATTGTTGCCCAGAGACAGAAGCAAAACAGAAAAAAGATTTGA 1479 0.449 MDPKLTINCHRNEFLPTSAGTQLPESPRIPMEFLSRSWSASALEVSKALRPPQPHTPPSCIASKPSNASSCLTNSIPEETTYHSEESSTMCGNQFSFASSATSQFVLERIMSQSTREEVSPLTSGRLSHSSEPVNGGGGSLTGTDSPPISPSEEYDDVVKFFRANNSIHPLFNGGRAMIMSTATTGNATPCSGPKTVGRWLKERREKKKEENRSHNAQLHAAISVAAVAAAVAAITAATAASSSKDEKMANTDMAVASAATLVAAQCVEAAEAMGAERDHLASVISSAVNVRSHDDITTLTAAAATALRGAATLKARALKEMRNITAVTPLERSIGIGVCGKAKNSNSSTSDSGEIINGENFLGACNLELLARGSELLKRTRKGDLHWKVVSVYIHRSGQVMLKTKSKHVAGTITKKKKDVVLDVSTNLPAWPGRHLFDDGEKRRYFGLKTESWGVVEFECRNQREYDIWTQGVSRLLSIVAQRQKQNRKKI* 493
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g1943 492 Pfam Auxin canalisation 24 333 IPR008546 -
Lja5g1943 492 MobiDBLite consensus disorder prediction 116 149 - -
Lja5g1943 492 Pfam Plant pleckstrin homology-like region 376 481 IPR013666 -
Lja5g1943 492 PANTHER AUXIN CANALIZATION PROTEIN 1 488 - -
Lja5g1943 492 MobiDBLite consensus disorder prediction 48 72 - -
Lja5g1943 492 MobiDBLite consensus disorder prediction 116 152 - -
Lja5g1943 492 PANTHER EXPRESSED PROTEIN 1 488 IPR040269 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g1943 Lja-Chr5 24315066 24319437 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g1943 - - lja:Lj5g3v1003610.1 810.446
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g1943 5 24315066 24319437 Lja5g1943 5 24315066 24319437 ECH
Lja1g1096 1 10919881 10923132 Lja5g1943 5 24315066 24319437 PCT