Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g1096 ATGGATCCAAAGTTCACAATCAACTGTCGGCGGCCGGAGCTCACTCCCGCCGGTGGCGGCACCCCTCTGCCGGAGAGTCCGAGAGTGCCAATGGAGTTTCTGTCAAGGTCATGGAGTGCCTCAGCTCTTGAGGTTTCCAAAGCTCTTGCATCTCAACCAACTCTTTCTTCATGCAAACCTCCAAATGCCACTATTCCTGAAGAAACCTGTTGCTCTGAAGAGTTCTCAACTATGCCAAAGAACCAGTTCTCTTTTGCTTCCTCTGCTACCTCACAGCTTGTCCTTGAACGCATTATGTCACAGTCCGCAAGAGAGGAAGTGTCACCATTAACTTCAGGAAGGTTATCTCACAGCAGTGAGCCTTTGAATGGTGGTGGTTCATTAACGGGAACAGATAGCCCACCAATTTCTCCTTCAGAAGAATTTGACGATGTTGTCAAGTTTTTTCGGGCAAACAATTCAATTCTCCCGTTGTTCAATGGTGGAAGAGCAAGTGCTGCTATTGGCAATGGCACAGCTAGCTCAGGACCTAAAACTGTTGGAAGATGGTTGAAAGACCGAAGAGAAAAGAAGAAGGAAGAAAATAGAACCCACAATGCTCAGCTGCATGCTACAATTTCAGTGGCTGCAGTAGCTGCTTCTGTAGCAGCCATGGCGGCTGCAACATCAGCCTCATCTACGCCCAGCAAGGATGAGAAGATGGCCAAGACTGACATGGCTGTGGCTTCTGCAGCCACGTTGGTCGCGGCGCAGTGTGTAGAGGCTGCTGAAGCCATGGGAGCTGAGCGTGACCACCTTGCTTCTGTGGTCAGCTCAGCGGTAAACGTCCGTTCTCATGATGATATCACCACTCTCACAGCTGCAGCTGCCACAGCTCTGAGAGGAGCAGCAACCTTAAAAGCAAGAGCTTTGAAGGAAGTATGGAACATTGCCGCAGTGACACCACTAGAGAAAGGCATTGGGGGGATTAACATATGTGTGAAAGGAAATAACAGCAACACCAGCAATACCAGCACAAGTGACAGTGGAGAAATAATCCATGCAGATAATTTTTTAGGATCTTGCAGCCAAGAGCTACTTGCTAAGGGCAGTGAATTACTCAAACGCACCCGTAAAGGTGATCTCCACTGGAAAGTAGTTTCTGTTTATATACACAGAACAGGCCAGGTAATGCTGAAAATGAAGAGCAAACGCATTGCTGGAACCATTACCAAAAAGACAAAGATTGTTGTGTTAGACGTGTGCAAAGATCTACCAGCATGGCCAGGAAGGCACCTGTTTGATGATGGAGAAAAGCGACGCTACTTTGGATTGAAGACAGACTCAAGGGGGGTTGTGGAGTTCGAGTGTAGAAATCAAAGAGAATATGATATCTGGACTCAAGGGGTTTCAAGGCTCCTCACCATTGTTGCACAAAGACAAATCAAGAACTGA 1434 0.4763 MDPKFTINCRRPELTPAGGGTPLPESPRVPMEFLSRSWSASALEVSKALASQPTLSSCKPPNATIPEETCCSEEFSTMPKNQFSFASSATSQLVLERIMSQSAREEVSPLTSGRLSHSSEPLNGGGSLTGTDSPPISPSEEFDDVVKFFRANNSILPLFNGGRASAAIGNGTASSGPKTVGRWLKDRREKKKEENRTHNAQLHATISVAAVAASVAAMAAATSASSTPSKDEKMAKTDMAVASAATLVAAQCVEAAEAMGAERDHLASVVSSAVNVRSHDDITTLTAAAATALRGAATLKARALKEVWNIAAVTPLEKGIGGINICVKGNNSNTSNTSTSDSGEIIHADNFLGSCSQELLAKGSELLKRTRKGDLHWKVVSVYIHRTGQVMLKMKSKRIAGTITKKTKIVVLDVCKDLPAWPGRHLFDDGEKRRYFGLKTDSRGVVEFECRNQREYDIWTQGVSRLLTIVAQRQIKN* 478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g1096 477 PANTHER EXPRESSED PROTEIN 3 475 IPR040269 -
Lja1g1096 477 MobiDBLite consensus disorder prediction 104 136 - -
Lja1g1096 477 MobiDBLite consensus disorder prediction 104 139 - -
Lja1g1096 477 MobiDBLite consensus disorder prediction 1 27 - -
Lja1g1096 477 PANTHER AUXIN CANALIZATION PROTEIN 3 475 - -
Lja1g1096 477 Pfam Plant pleckstrin homology-like region 365 470 IPR013666 -
Lja1g1096 477 Pfam Auxin canalisation 24 319 IPR008546 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g1096 Lja-Chr1 10919881 10923132 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g1096 - - gmx:100793202 717.227
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g1096 1 10919881 10923132 Lja1g1096 1 10919881 10923132 ECH
Lja1g1096 1 10919881 10923132 Lja5g1943 5 24315066 24319437 PCT