Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g1909 ATGGCTGCTTTAATCTCACACATGCTCATTATCCCCTTGTCCAAAACGCACCGAGCTAGCTTCCGATCAAAACCAATCCCACCACCACCATCATATCTCACCCAAAACCAAAAGTCAACAAACCTCACCGTCCGCAACAACAACAACAACTCCTCCGCCGCAACACCGTCAACCGCCTCCTGGCGCGAAATCCACGGTGAGAACGAATGGGCCGGGCTTCTGGACCCCATGGACCCAACCCTCCGACAAGACCTGCTCCGCTACGGGGAGATGGCACAAGCCTGCTACGACGCCTTCGACTTCGACCCTTACTCCATGTACTGCGGCACCTGCCGCTTCAAGCCCGGCAACTTCTTCAACGCTCTCGGCATGTCCCACCACGGCTACACCGTCACGCGCTTCCTCTACGCCACCACCAAGATGAACCTCCCTAGCCTCTTCAAGAAGTCTCACTGGCCCAAGATGTGGAGCAAGCATGCAAACTGGGCGGGGTACGTTGCTGTTTCGGACGACGCCACCTCAGAGCAGCTCGGTCGCAGGGACATCGCCGTGGTGTGGCGCGGCTCCGTCTCGTACCTGGAGTGGATGGCAGACTTCGTGATGATTTTCCTCAAACCCATCTCGCACTTCCTCCCTTGCCCCGATCAAGCAGTTAAGGTGGAACATGGGCTTTTGGAGCTTTACACCGACAAGAAACAAAACATCGATTCCTGCAAGTTCTCAGCAAGGGAACAAGTTCTTTTAGAGGTGGAGAAGTTGATGAAGATATATCACAACGAGGAACTCAGCATCACTGTCACGGGCCACGATCTAGGGAGCGGGCTGGCTACACTTAGCGCTTACGACATCGCTGAAACAAGGTTGAACGTGAAGAGAGATAGCCATGTCGTTCCGGTTTCGGTGATATCATTTTCGGGTCCGAGGGTTGGGAATGGGAGGTTCAAGGAGAGGCTGGAAATGTTGGGGGTGAAGGTGCTGAGGGTGGTGAACGTGCATGACGCGATACCCACGATACCAGGGTTTGTGTTCAACGAACAGAGGTCCCCAGCAGCGATGAAGCTCGCGGAGGATTTGCCGTGGAGTTATATGCATGTCGGGGTGGAGCTGGTGTTGGACCACAAGAACTCGCCTTTCCTAAACCCCAATGAAGATTCTGCCCTTGCTTGTGCCCATAACTTGGAGGTTCTTTTACATTTGATTGACGGATACCACGGAAAGGGGCAAAGGTTCGAGCTAGCTACCGGAAGAGATCCTGCTTTGGTGAACAAGGCCTGTGAAAAGACCATTGCTTGGTTCCACCAATTTGATTATAGAAGTATGTAA 1323 0.5344 MAALISHMLIIPLSKTHRASFRSKPIPPPPSYLTQNQKSTNLTVRNNNNNSSAATPSTASWREIHGENEWAGLLDPMDPTLRQDLLRYGEMAQACYDAFDFDPYSMYCGTCRFKPGNFFNALGMSHHGYTVTRFLYATTKMNLPSLFKKSHWPKMWSKHANWAGYVAVSDDATSEQLGRRDIAVVWRGSVSYLEWMADFVMIFLKPISHFLPCPDQAVKVEHGLLELYTDKKQNIDSCKFSAREQVLLEVEKLMKIYHNEELSITVTGHDLGSGLATLSAYDIAETRLNVKRDSHVVPVSVISFSGPRVGNGRFKERLEMLGVKVLRVVNVHDAIPTIPGFVFNEQRSPAAMKLAEDLPWSYMHVGVELVLDHKNSPFLNPNEDSALACAHNLEVLLHLIDGYHGKGQRFELATGRDPALVNKACEKTIAWFHQFDYRSM* 441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g1909 440 SUPERFAMILY alpha/beta-Hydrolases 151 404 IPR029058 -
Lja5g1909 440 Pfam Lipase (class 3) 184 341 IPR002921 GO:0006629
Lja5g1909 440 CDD Lipase_3 117 375 - -
Lja5g1909 440 PANTHER PHOSPHOLIPASE A1-IGAMMA2, CHLOROPLASTIC 19 426 - -
Lja5g1909 440 PANTHER PHOSPHOLIPASE A1-IBETA2, CHLOROPLASTIC 19 426 - -
Lja5g1909 440 Gene3D alpha/beta hydrolase 60 434 IPR029058 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g1909 Lja-Chr5 23464508 23467128 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g1909 44 426 Acyl Lipid Metabolism Gene Families AT2G30550 59.278 2.20e-168 482
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g1909 - - gmx:100779676 535.413
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g1070 1 10661705 10665101 Lja5g1909 5 23464508 23467128 PCT