Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g1907 ATGCTGCCTTTGCATTGTTTGACAACTTCATATGAAATAAACTGGTTGGTCCCCTTTGTTTGTCCACAGAACAAACGAAGCCTCCTGAGTCATTTGCATCATTTCCTTTTTCCAGTCTATAATCATTCACAGTTACTAAAACAAAGAGAGGAAATGGCAACCATCTCCGCCACTATCACTACCCCATCGATCACCCGTGCAGGTCTTGTGCAAAAGCGTCCTCTTGTGATCTCTTCCTCTCCAGTTCTTGGTTTGCCAGCATTGGCTAAGGTGGGAAGAGTGAGGTGTTCCATGGAGGGAAAGCCTTCTGGGCAGGAAAGCAGCTCAAAGATGGGAATGGGGGCTTCTTTGATGGCAGCTGCCAGCGCTGCAGCCATGTCAAGCCCAGCAGCCATGGCCTTGGTGGATGAGAGGTTGAGCACTGAAGGAACCGGGCTTCCCTTTGGGCTCAGCAACAACCTTCTTGGTTGGATCCTTTTTGGTGTCTTTGGTCTTATCTGGGCTGTTTACTTTGTCTACGCTTCAGGCCTCGACGAGGATGAAGAGTCTGGGTTGTCCCTTTAA 564 0.4911 MLPLHCLTTSYEINWLVPFVCPQNKRSLLSHLHHFLFPVYNHSQLLKQREEMATISATITTPSITRAGLVQKRPLVISSSPVLGLPALAKVGRVRCSMEGKPSGQESSSKMGMGASLMAAASAAAMSSPAAMALVDERLSTEGTGLPFGLSNNLLGWILFGVFGLIWAVYFVYASGLDEDEESGLSL* 188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g1907 187 PANTHER PHOTOSYSTEM II REACTION CENTER W 52 187 - -
Lja5g1907 187 PANTHER PHOTOSYSTEM II REACTION CENTER W PROTEIN, CHLOROPLASTIC 52 187 IPR009806 GO:0009507|GO:0009523|GO:0015979
Lja5g1907 187 Pfam Photosystem II reaction centre W protein (PsbW) 52 187 IPR009806 GO:0009507|GO:0009523|GO:0015979
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g1907 Lja-Chr5 23433300 23435203 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g1907 K02721 - gmx:100305788 169.474
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g1907 5 23433300 23435203 Lja5g1907 5 23433300 23435203 ECH
Lja1g1069 1 10660636 10661194 Lja5g1907 5 23433300 23435203 ECH
Lja1g1069 1 10660636 10661194 Lja5g1907 5 23433300 23435203 PCT