Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g1069 ATGACAACCATCATGTCTGGCACCCCAACATCATCTATCACTGGCACAGGTCTTGTACAAAAGCAACCTCTTGGGGTCTCATCCTCTACCGTCATGGGGTTGCCAGCAATGGCTAAGGTGGGAAGAGTGAGGTGCTGCTCCATGGAGGGAAAGGAAAGCAGGTCAAACATGGGAATGGGGGCATCCTTGATAGCAGCTACCCTAGCTGCAACCATGTCTAGCCCAGCCATAGCTTTGGTGGATGAGAGATTGAGCACTGAAGGAACAGGGCTTCCCTTTGGACTCAGTAACAACCTTCTTGGTTGGATCCTGCTTGGTGTCTTTGGTCTTATATGGGCTAACTATATTGTCTACACTTCCACACTTGATGAGGATGATGACTCTGGATTGTCCCTCTAA 399 0.4937 MTTIMSGTPTSSITGTGLVQKQPLGVSSSTVMGLPAMAKVGRVRCCSMEGKESRSNMGMGASLIAATLAATMSSPAIALVDERLSTEGTGLPFGLSNNLLGWILLGVFGLIWANYIVYTSTLDEDDDSGLSL* 133
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g1069 132 Pfam Photosystem II reaction centre W protein (PsbW) 1 132 IPR009806 GO:0009507|GO:0009523|GO:0015979
Lja1g1069 132 PANTHER PHOTOSYSTEM II REACTION CENTER W PROTEIN, CHLOROPLASTIC 1 132 IPR009806 GO:0009507|GO:0009523|GO:0015979
Lja1g1069 132 PANTHER PHOTOSYSTEM II REACTION CENTER W PROTEIN, CHLOROPLASTIC 1 132 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g1069 Lja-Chr1 10660636 10661194 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g1069 K02721 - gmx:100306223 189.889
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g1069 1 10660636 10661194 Lja1g1069 1 10660636 10661194 ECH
Lja1g1069 1 10660636 10661194 Lja5g1907 5 23433300 23435203 ECH
Lja1g1069 1 10660636 10661194 Lja5g1907 5 23433300 23435203 PCT