Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g1894 ATGTCTGGGGAACAATTTGATGGACAAGATGCAGGCTATGTGCCTGAGAATCCTGATGATTTTCCGCAAAACAATTCCGATGAAATTGAAGGAGGGAATGTGATTGATGACGACTCTGGGTTTCCTCAACTACAGCCTGATGATGTGCAGGAGGATGTGGATGTGGGAGTGGGAGATTTGGCTGAGGATGCCAATCCTCCTGAAGGTGAATTTGATGGTGGTCATGATGTTGTTGAAGATTTGCCTGGAAACGATGTTGATGATTCTCTTCCGCCGGAGCTTACTGAGGAACAAGAACAACATGATGGAGTCATTACTGAGGAACAAGAACAACATGATGGAGGAGGCGTGACTGAGGAGAATTTTGGCTCCCCAGAAAAACAGGTACCCGGGGAAGATTTGAAAGGGAGTGAAATAAAGAAGTGGCCGGGGTGGCCTGGAGAGAATGTTTTCAGGATGTTGGTTCCTGCGCAAAAGGTTGGCAGTATTATTGGCCGTAAGGGCGAGTTTATTAAGAAAATTACTGAAGAGACTAAGGCTCGTATTAAGATTCTCGATGGTCCACCTGGAACTGCAGAAAGAGCAGTAATGGTTTCTGCAAAAGAAGAACCAGAGCGCAGCATACCACCTGCTGTGGAGGGCTTGTTAAGGGTTCATAAACACGTTGTCAATGTGGACCAACCTGCTGATAGTGCATCAGGTGCAGGACGCCAAATAATTACAAGACTTCTAGTCGCAGATACTCAAGCAGGAAGTTTGATTGGGAAGCAGGGTTCGACTATAAAATCCTATCAAGATGCCACAGGTTGCAATTTACGTGTTCTTGGTTCAGATCACCTGCCAGTTTTTGCTCTGCGAGATGATAGTGTTGTTGAAATACAAGGAGAATCTGCTGGGGTTCACAAGGCAGTTGAACTTGTTGCTCTTCATCTTAGGAAGTTCTTGGTTGACCGCAGCATAGTTGGAGTATTTGAAACACAGATGCAAAGACCAGATGTTCGAGTTAACCCGAATGTGCCACCACACCAACCTTGGGGTCCTCCTCCTCCTCAAGGGTTTCCAGGTCCTGGAAGTGGTGGTGGACCTGCTTTTCCACCTAATCCTCAATATATGCCGCCACCTTCACATAACTATGATAATTACTACCCACCTGCTGACCTGCCTCCCATGGACAAGCACCTTCATCAGGGTCCACCACCTGCCTATGCAAGGGATGCTCCTATGGGAATTCATCCATCCAGTGCACCTCCGCAACAATCTGGTGTGACTAAGGTCACACATCATATGCAAATTCCCCTGTCATACGCAGATGCTGTTATTGGAGCATCAGGAGCAAATATTAGCTACATTCGACGTGCTAGTGGAGCAAGTATTACAATTCAAGAAACCAGGGGTGTGCCAGGGGAGATGACCGTAGAGATAAGTGGTACTGCTTCTCAAATTCAAGCAGCCCAACAGCTGGTCCAGAATTTCATGGCTGAAGCAGCATCTGCGCAACAGGATCAAATGAGTGGACAAATTAATCAAGGTTATAATTCCTATCCTACTAATGCCCCTGTATATGCATCTCCGCCACAAAGCGCTGGTGGTCATGCAGGCCATGCGCCTCCTGCAGATTATGGTCCTGTATATGGCACCAATTATGGTTATTGA 1653 0.4676 MSGEQFDGQDAGYVPENPDDFPQNNSDEIEGGNVIDDDSGFPQLQPDDVQEDVDVGVGDLAEDANPPEGEFDGGHDVVEDLPGNDVDDSLPPELTEEQEQHDGVITEEQEQHDGGGVTEENFGSPEKQVPGEDLKGSEIKKWPGWPGENVFRMLVPAQKVGSIIGRKGEFIKKITEETKARIKILDGPPGTAERAVMVSAKEEPERSIPPAVEGLLRVHKHVVNVDQPADSASGAGRQIITRLLVADTQAGSLIGKQGSTIKSYQDATGCNLRVLGSDHLPVFALRDDSVVEIQGESAGVHKAVELVALHLRKFLVDRSIVGVFETQMQRPDVRVNPNVPPHQPWGPPPPQGFPGPGSGGGPAFPPNPQYMPPPSHNYDNYYPPADLPPMDKHLHQGPPPAYARDAPMGIHPSSAPPQQSGVTKVTHHMQIPLSYADAVIGASGANISYIRRASGASITIQETRGVPGEMTVEISGTASQIQAAQQLVQNFMAEAASAQQDQMSGQINQGYNSYPTNAPVYASPPQSAGGHAGHAPPADYGPVYGTNYGY* 551
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g1894 550 MobiDBLite consensus disorder prediction 1 138 - -
Lja5g1894 550 ProSiteProfiles Type-1 KH domain profile. 424 488 - -
Lja5g1894 550 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 140 203 IPR036612 GO:0003723
Lja5g1894 550 ProSiteProfiles Type-1 KH domain profile. 148 215 - -
Lja5g1894 550 PANTHER KH DOMAIN CONTAINING RNA BINDING PROTEIN 84 544 - -
Lja5g1894 550 CDD PCBP_like_KH 242 308 - -
Lja5g1894 550 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 231 320 IPR036612 GO:0003723
Lja5g1894 550 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 414 495 IPR036612 GO:0003723
Lja5g1894 550 MobiDBLite consensus disorder prediction 340 377 - -
Lja5g1894 550 CDD KH-I 426 489 - -
Lja5g1894 550 Coils Coil 481 501 - -
Lja5g1894 550 MobiDBLite consensus disorder prediction 68 82 - -
Lja5g1894 550 MobiDBLite consensus disorder prediction 94 115 - -
Lja5g1894 550 Pfam KH domain 241 307 IPR004088 GO:0003723
Lja5g1894 550 Pfam KH domain 151 203 IPR004088 GO:0003723
Lja5g1894 550 Pfam KH domain 427 489 IPR004088 GO:0003723
Lja5g1894 550 ProSiteProfiles Type-1 KH domain profile. 238 307 - -
Lja5g1894 550 PANTHER POLY(RC)-BINDING-LIKE PROTEIN 84 544 - -
Lja5g1894 550 CDD PCBP_like_KH 150 219 - -
Lja5g1894 550 Gene3D - 148 315 - -
Lja5g1894 550 Gene3D K Homology domain, type 1 413 501 IPR036612 GO:0003723
Lja5g1894 550 SMART kh_6 423 493 IPR004087 GO:0003676
Lja5g1894 550 SMART kh_6 237 312 IPR004087 GO:0003676
Lja5g1894 550 SMART kh_6 147 217 IPR004087 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g1894 Lja-Chr5 23114774 23120167 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g1894 K21444 - gmx:100818363 762.681
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g1894 5 23114774 23120167 Lja5g1894 5 23114774 23120167 ECH
Lja1g1058 1 10557365 10562745 Lja5g1894 5 23114774 23120167 PCT