Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g1058 ATGGCTGAGGAAGATTTTGGTGGATATGATATAGGATATGTGCCTGAGGATCTTGGTTTTCCCCAGAATCTTGTTGATGAGCATGATGTGGAGACTGTGATTGACAGCTCTGGATTTCCTCAACTACTGTCTGATGATCAAGGTGCTGACAATTTGGTTGAGGTTCTCCAGGGTGCCCATTTTCCTGAGAATGATTTTGATGGGTACCAACCTGATGTTGGGGGTTTGCCTGAAGACACAGAGTATCCACAGCAAGAGCATGTTGATGAAGGCCATGATGGTGTAGGAGTTGTGACTGAGAATTTTGATTCTCTGCAAGAACAGGGAGCCGCAGCCGCAGCTGCGACTGATTCCAAGGGAAATGAAATTAAGAGATGGCCAGGGTGGCCTGGAGAGAGTGTTTTCAGGATGTTGGTTCCGGTGCAAAAGGTTGGCAGTATTATTGGCCGAAAGGGCGAGTTCATTAAGAAAATTACCGAAGAGACAAAGGCGCGAATTAAAATTCTTGATGGTCCTCCTGGAGCCCCGGAAAGAGCAGTAATGATTTCTGCAAAAGAAGAGCCAGATTTTCCCATACCACCTGCTGTTGATGGTTTGCTAAGGGTTCATAAACAAGTTATGAATGTTGATCGTGACCCTGCTGGCAGCACGTTAGGTGCTGGACGCTCAGTTGTTACTAGGATTCTAGTTGCAGAAACTCAAGCAGGAAGCTTGATAGGGAAGCAAGGCTCGACTATAAAATCTATTCAAGATGCCTCGGGTTGTACTATTCGTATTCTCGGATCAGAAAACCTGCCAGTTTTTGCTTTGAGAGGTGACAGTGTAGTTGAAGTGCAAGGAGAATCTGCTGGTGTTCACAAGGCAGTTGAACTTATTGCAAGTCATTTACGTAAGTTCTTGGTTGATCGCAGCATAGTTGGCGTTTTTGAAAAACAAATGCAAATGCCAGATGTTCGAGTTAACCAGAATGTGCCACCATCCCAAACTTGGGGTCCTCCTCCTCAAGGGTTTCCACCTCTTGGTGGTGGGGGTGGACCTGGTTTTGCTCCCAATCGTCAATATGTGCCACCTTCACAACAGTATGATCATTATTACCCACACCCACCTGCTGACCTGCCAGCCATGGACAACCCCCTTCATCAAGGTCCACCACCTGCCTATGCAAGGGATACTTCTATGGGGTTTTATTCACCAAACGTGCAACCACAACAATCTGTTGTAACTAAGGTTACACAGCACATGCAAATTCCGCTTTCATATGCGGATTCTGTTATTGGAGCATCAGGAACAAATATCAGCTACATTCGTCGTGCTAGTGGAGCCAGTATTACAATTCAGGAGACAAATGGTGTGCCAGGGGAGATGACTATCGAGATAAGTGGGACTTCTTCACAAATACAGGCAGCCCAACAGCTGGTTCAGAATTCCGTTGCTGAAGCTGCAAGTGCGACACAGGATCAAGTAGGGGGATCAGTTGGCCAAGGTTACAATGCCTATCCAACAAACGCTCCTGTTTATGCATCTCTACCCTCTGGCGCCGGCGACCATACAGGCCATGCACCTTCTGCAGATTATGGCTCCATGTATGGTACCAATTATGGTTATTAA 1608 0.4652 MAEEDFGGYDIGYVPEDLGFPQNLVDEHDVETVIDSSGFPQLLSDDQGADNLVEVLQGAHFPENDFDGYQPDVGGLPEDTEYPQQEHVDEGHDGVGVVTENFDSLQEQGAAAAAATDSKGNEIKRWPGWPGESVFRMLVPVQKVGSIIGRKGEFIKKITEETKARIKILDGPPGAPERAVMISAKEEPDFPIPPAVDGLLRVHKQVMNVDRDPAGSTLGAGRSVVTRILVAETQAGSLIGKQGSTIKSIQDASGCTIRILGSENLPVFALRGDSVVEVQGESAGVHKAVELIASHLRKFLVDRSIVGVFEKQMQMPDVRVNQNVPPSQTWGPPPQGFPPLGGGGGPGFAPNRQYVPPSQQYDHYYPHPPADLPAMDNPLHQGPPPAYARDTSMGFYSPNVQPQQSVVTKVTQHMQIPLSYADSVIGASGTNISYIRRASGASITIQETNGVPGEMTIEISGTSSQIQAAQQLVQNSVAEAASATQDQVGGSVGQGYNAYPTNAPVYASLPSGAGDHTGHAPSADYGSMYGTNYGY* 536
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g1058 535 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 127 186 IPR036612 GO:0003723
Lja1g1058 535 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 399 480 IPR036612 GO:0003723
Lja1g1058 535 CDD KH-I 411 474 - -
Lja1g1058 535 ProSiteProfiles Type-1 KH domain profile. 132 187 - -
Lja1g1058 535 CDD PCBP_like_KH 225 293 - -
Lja1g1058 535 Gene3D K Homology domain, type 1 134 203 IPR036612 GO:0003723
Lja1g1058 535 PANTHER KH DOMAIN CONTAINING RNA BINDING PROTEIN 59 529 - -
Lja1g1058 535 SMART kh_6 408 478 IPR004087 GO:0003676
Lja1g1058 535 SMART kh_6 222 297 IPR004087 GO:0003676
Lja1g1058 535 SMART kh_6 131 211 IPR004087 GO:0003676
Lja1g1058 535 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 216 306 IPR036612 GO:0003723
Lja1g1058 535 PANTHER POLY(RC)-BINDING-LIKE PROTEIN 59 529 - -
Lja1g1058 535 ProSiteProfiles Type-1 KH domain profile. 223 292 - -
Lja1g1058 535 CDD PCBP_like_KH 134 203 - -
Lja1g1058 535 MobiDBLite consensus disorder prediction 327 394 - -
Lja1g1058 535 ProSiteProfiles Type-1 KH domain profile. 409 473 - -
Lja1g1058 535 Pfam KH domain 411 474 IPR004088 GO:0003723
Lja1g1058 535 Pfam KH domain 135 187 IPR004088 GO:0003723
Lja1g1058 535 Pfam KH domain 226 293 IPR004088 GO:0003723
Lja1g1058 535 Gene3D K Homology domain, type 1 399 485 IPR036612 GO:0003723
Lja1g1058 535 Gene3D K Homology domain, type 1 220 298 IPR036612 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g1058 Lja-Chr1 10557365 10562745 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g1058 K21444 - gmx:100799901 791.186
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g1058 1 10557365 10562745 Lja5g1894 5 23114774 23120167 PCT