Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g1868 ATGTTTATCAGGCCAAGAGATGCTAGTGCTTTTAGTATATTCAAATGGAAACGTCAAGGTGAATCTTCGTTGACAGCTGGTTTACTTCAGGATGTTCCTGGAGAGATTGAATTGCTTGATTGTAGAAGGATCCCGAGTCCAGGTAGTGAGAGCCCTTCAGGGCTTCTGAATGGTGAGAGCCTAAATGTGCACCCAATTGCTGATTTGGATCTCTTCTTTGAAAGGCTTTATAGCTACTACTGTGAGAAAGGGCTCTGGTGCATCATCATAAAATGGATTGTTGAACTTCTGAGTCTAGGGTTCACAATATGCTTTTCAGGATTTTTTTTACTTTATGTTGATTGGAATGGACTTCGTAATGCGAAGTGTGGAATGGAAGCAGTTGAATCTGGAAGGAAGCCATGTGATCTTGCTAAAGAAGCTCTCCATGAACACCCTTTAACCCCATTAACAGTTAGCAAAGCTATTATTATTGGATACTTGGGAATATTGTCTGTTTATTGGATATTTTGCTTCTTGAGATTCTTTGCTCAACTAAAGGATACGCTAGAAATCCGACAATTTTACTACAATAATATCCATGTTACCGACAATGAAATTCAAACCATGCCCTGGGCTACAATTCTTGAAAAGGTTGTTCGTGTGCAAAGCTCACAACAACTCTGTGTGGTAAAGGATCTTACTATTCATGACATGGTGATGAGGTTGATGCGGAAGGAGAACTACTTGATTGGAATGCTCAACAAGGGCGTGCTTGCTTTTCCCATTTCTCAGTGGGTCCCAGGTGCTGGTCCTACAGTGAAATCTGGTACTGATGGAACTCAATATCGTCTAATACTTACAAAGACTCTTGTGTGGACCTTAAATTGGTGCATCCTGCAAAGCATGTTTGATCGAAACTTTTGTATCAGAAGGGATTTTGTGTCAAATCCAAGGACATTGAAGAAAAGGCTTATGGTAGTTGGGCTTGCAATGCTTTTACTTTCTCCATTTCTGGTCATATTCATGCTGGTATATCTATTTCTGAGGCATGCTGAACAATTTTACAATCACCCAAGCACAGCATCATCTCGAAGATGGTCGAATTTGTCACGATGGATCTTTAGAGAATTCAATGAGGTGGACCATCTCTTCAGGCATCGGATCAACAGCAGTGTATTACATGCTTCTGATTATCTCAAGCAATTCCCTTCACCTATCATATCTATCATTGCAAAATTCATCTCATTTGTATCAGGTGGCTTTGCTGCAGTACTGATCATCATTGCTTTTCTAGAAGAGTCTCTGCTAGAGGGTCATATATTTGGTCGAAACTTGTTGTGGTATGCTGCTGTTTTTGGAACTATAACTGCTATTAGTCGTGCTGCAATTGTAAACGAACTTCTAGTCATAGACCCCAAAGGGGCAATGTCTATGGTAGTTCAGCATACACATTATATGCCAAAGAGATGGCGTGGCAAAGAAAGTACTGAAATGGTCCGAATGGAGTTTGCAACCTTATTCCAGTATACTGGGATGATGTTACTTGAGGAGATGGCCTCAATTTTCCTTACTCCATATTTACTTCTGCTGGTTGTCCCAAAGCGGGTTGATGATATCTTGCAGTTCATTGCTGATTTTACTGTGGACGTTGAAGGTGTTGGTCATGTATGCAGTTTTAGTGTCTTTGATTTTCAAAAGCATGGAAACAGTAGTTATGGTTCCACATACAATGTACATCGCGACAAGAGGAGTTCACAGGGAAAGTTGGAGAAATCACTTTTAAGCTTTCAGAGTAGTTACCCTTCTTGGGAGCCAAATGCTCAGGGGAAGCAGTTTTTGCTAAATCTGAGAACATTCAGAGACCAGAAGTTATCTGGACAGGTAAACAGTCATGGACATTCCCCCTTCAGAATGTGGAGAGGCAGTCCCAACATGGGAAGCAATGGAGATAGAAGCAGGTTTGCATTACCTGGCAATCACTTGGGTTCATTGTGGTTCATTGAAGGCAACAATCAAAACAATCACCCATATCTTCTTGATTGGTACTATACGGATGTAACTTCAAGAGATGCGCCAACAGATCATCAAATCAACGAATCTGAACATCACTCCAGAGATTGGATGCCCTCCAACTTGGCACATGATGAACCAGTGTATGACGAATACATGAATGAATATTGTGACGATCGGGCCGCTTCCCATGTTGGGGCTTCCACTTCAGCTCCCATCTTCAAGGATAGCCTAATTCAGGATCGAAATTCCGATGATCTGCGCCACCCTACCAGGAGTCATTGGTGGGCTAGAAGTCATTCACAGGGTGGACGCGGTCAGACAAGCTTTTTTGAGCCTCCAAATTTCAATGATCAAAGAGCAGACAATCACTATGATAAATTTTCTGATATAGGGTCAGAGGATCAAGAACAGGAACAACACTTGTACTGGAGAGATCATCACAAGTTATCTAGTACAGTGCACACAGATGATTTAGAGGCCGGTGAATTCAATCTTCATTTCGATGATATTTATAATAGACATCCAGAAAATCTCACTGAAAATTCAAACACTGCAAGCTTTTGA 2559 0.4127 MFIRPRDASAFSIFKWKRQGESSLTAGLLQDVPGEIELLDCRRIPSPGSESPSGLLNGESLNVHPIADLDLFFERLYSYYCEKGLWCIIIKWIVELLSLGFTICFSGFFLLYVDWNGLRNAKCGMEAVESGRKPCDLAKEALHEHPLTPLTVSKAIIIGYLGILSVYWIFCFLRFFAQLKDTLEIRQFYYNNIHVTDNEIQTMPWATILEKVVRVQSSQQLCVVKDLTIHDMVMRLMRKENYLIGMLNKGVLAFPISQWVPGAGPTVKSGTDGTQYRLILTKTLVWTLNWCILQSMFDRNFCIRRDFVSNPRTLKKRLMVVGLAMLLLSPFLVIFMLVYLFLRHAEQFYNHPSTASSRRWSNLSRWIFREFNEVDHLFRHRINSSVLHASDYLKQFPSPIISIIAKFISFVSGGFAAVLIIIAFLEESLLEGHIFGRNLLWYAAVFGTITAISRAAIVNELLVIDPKGAMSMVVQHTHYMPKRWRGKESTEMVRMEFATLFQYTGMMLLEEMASIFLTPYLLLLVVPKRVDDILQFIADFTVDVEGVGHVCSFSVFDFQKHGNSSYGSTYNVHRDKRSSQGKLEKSLLSFQSSYPSWEPNAQGKQFLLNLRTFRDQKLSGQVNSHGHSPFRMWRGSPNMGSNGDRSRFALPGNHLGSLWFIEGNNQNNHPYLLDWYYTDVTSRDAPTDHQINESEHHSRDWMPSNLAHDEPVYDEYMNEYCDDRAASHVGASTSAPIFKDSLIQDRNSDDLRHPTRSHWWARSHSQGGRGQTSFFEPPNFNDQRADNHYDKFSDIGSEDQEQEQHLYWRDHHKLSSTVHTDDLEAGEFNLHFDDIYNRHPENLTENSNTASF* 853
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g1868 852 Pfam Autophagy protein ATG9 63 557 IPR007241 GO:0006914
Lja5g1868 852 PANTHER APG9 AUTOPHAGY 9 1 843 IPR007241 GO:0006914
Lja5g1868 852 MobiDBLite consensus disorder prediction 747 793 - -
Lja5g1868 852 MobiDBLite consensus disorder prediction 760 780 - -
Lja5g1868 852 PANTHER AUTOPHAGY-RELATED PROTEIN 9 1 843 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g1868 Lja-Chr5 22504442 22511985 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g1868 K17907 - gmx:100779344 1411.36
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g1868 5 22504442 22511985 Lja5g1868 5 22504442 22511985 ECH
Lja1g1044 1 10401321 10409060 Lja5g1868 5 22504442 22511985 PCT