Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g1044 ATGTTTAGCAGACCAAGGGGTGTCAATGCTTTTAGTATATTCAAATGGAAAGAGCAAGGTGCATCATCACTGACAACAGATTTACTTAATGATATTCCACCAGAGATTGAGTTGTCTAATTATGGAAAGATCCCAAGTCCAGGAAGTGAGAGCCCTTCAGGGCTTCTTAATGGTGAAAGCCTAAATGTAGAACCGATTACCGATTTGGATCTCTTCTTTGAAAGACTTTATAGTTACTACTGCGAGAAAGGTCTATGGTGCATCCTTACAAAGTGGATTGTTGAACTTCTAAGTCTGGGCTTCACCATTTGTTTTTCAGGATTTTTTTTGCTGTATGTTGATTGGAATGGGCTCCGGAATGCAAAGTGTGGGATGGATGCAGTTGAGTCTGGAATTAAGCCTTGTGATCTTGCTAAAGAAGCTCTTAATGAACACCCTTTAACCCCACTAACACTTACGAAAGCTATTATTGTTGGATACTTGGGAATATTTTCTATCTATTGGATATTTTGCTTCTTGAGGTTCTTTGCACAGCTAAAGTATACTCTGGAGATTCGACAGTTTTACTACAACACTCTTCATGTTACTGACAATGAACTTCAAACCATGCCCTGGGCTACAATTCTTGACAAAGTTATTCTGGTACAAAGTACTCGTCCACTATGTGTGGTAAAGGATCTTTCTGCCCACGACATCATCATGAGATTGATGCGGAAAGAGAACTACTTAATTGGATTGCTCAACAAGGGTGTGCTTGCTTTCCCAATTTCTCCTTGGGTCCCAGGTGCTGGTCCTCGAGTGAAATCTAGTTCAAATGGAACACAATACCATTTGATACTTACTAAGACCCTTGAATGGACTTTGAATTGGTGCATCCTGCAGAGCATGTTTGATCGAAACTTTCATGTCAGGAGAGATTTTGTGTCAAATCCAAAGACATTACAGAAAAGGCTTGTGGTAGTTGGGTTTGTAATGCTATTACTTTCTCCATTTCTTGTCATATTCATGCTGGTATATCTGTTTCTGAGGCATGCTGAGCAATTTTATAATCACCCAAGCACCGCATCATCTCGAAGATGGTCAAATTTGTCAAGGTGGATCTTTAGGGAATTCAACGAGGTGGAGCATCTCTTCAGGCATCGGATTAATAACAGTGTACTGCATGCTTCTGATTATGTCAAGCAATTTCCTTCTCCTATCATATCTATCATTGCAAAATTCATCTCTTTTGTATCGGGTGGCTTTGCTGCAATTCTGATCATCATTGCTTTTCTTGAAGAGTCTCTGCTAGAGGGCCATATATTTGGTCGGAACTTGTTTTGGTATGCTGCTGTTTTTGGAACTATAACTGCCATTAGCCGGGCTGCAATTGCAAACGAGCTTCTAGTTTTGGACCCTGAGGGAGCAATATCTATGGTGGTTCAGCATACACATTATATGCCAAAGAGATGGCGTGGCAAAGAAAGTACTGAAAAAGTCCGTATCGAGTTTGAAACCTTATTCCAGTATACTGGAATGATGTTACTTGAGGAGATGGCCTCGATTTTCCTCACACCATATTTACTTCTGTTTATTGTCCCAAAGCGAGTTGATGATATCTTGCAGTTCATTGCTGATTTCACTGTAAATGTTGAAGGTGTTGGGCATGTTTGCAGTTATAGCTCCTTTGATTTTCAAGAGCATGGAAACAGTAATTATGGTTCCCCATACAATGCACCTCGTAGCAGGCGTAGTTCCCAGGGGAAGATGGAGAAATCATTCTTGAGCTTTCAGAGTAGTTACCCTTCATGGGAACCAAATGCTCAGGGGAAGCGGTTTTCGCTAAATCTCAGAACATTCAGGGAGCAAAAGTTACGTGTACATGGAAACAGACATCCTGCATCATCCCCTTCTAGAATGTTTAGGGATAGTCCTACTCCTAATATGGGAAGCAATGGTGACAGAAACAGGTTTATATCCCGGGAATCGCCATACAGTACTTCTGTAACTGACAATCATTTAAGTTCATTGTGGTTGATTGAAACCATCCAAAACAATCATCCCTATCTTCTTGATTGGTACTATACATCTCAACCTCATGACACAACCTTGAGAGATGTCGTCCCATCAGAACCGTTTGGAGGAATAGAGCATCATTCCAGAGAGCATTGGATGCCCAACTTGACACAGAATGAACCTGTGTATGAAGAAAACTCACATGAGTATCTCGAGGTTCGGGCTGTATCTCAACTTGGAGCTTCCACTTCAGCTCCCATCTTCAGGGAAAGCCTAATTCAGGATCTGAATCATAATGAACTGTCCCCTTCAGCCAGGAGTCCTTGGTGGGATAGAAGTGGCCCTCAGGGTGGACATGCTCAGACAAGCTTTTTTGAGCCTCCAGATTTCAATCAACAAGCTGCATTTGGTTATCATGATAAGTATTCTGATAGAGGTTCTGAGGATCAAGATCATGAACAGCGCTTTTACTGGAGAGATTATAACAAATTATCTAGAACAGCATGCACAGATGATGACTTAGAGGCAGGAGAATTTAAACTTCATTTTGATGATATTTATAGCAGACCTCCAGATACTCCCACTGTAAATGTTCAAACTTTTGAGTGA 2604 0.4105 MFSRPRGVNAFSIFKWKEQGASSLTTDLLNDIPPEIELSNYGKIPSPGSESPSGLLNGESLNVEPITDLDLFFERLYSYYCEKGLWCILTKWIVELLSLGFTICFSGFFLLYVDWNGLRNAKCGMDAVESGIKPCDLAKEALNEHPLTPLTLTKAIIVGYLGIFSIYWIFCFLRFFAQLKYTLEIRQFYYNTLHVTDNELQTMPWATILDKVILVQSTRPLCVVKDLSAHDIIMRLMRKENYLIGLLNKGVLAFPISPWVPGAGPRVKSSSNGTQYHLILTKTLEWTLNWCILQSMFDRNFHVRRDFVSNPKTLQKRLVVVGFVMLLLSPFLVIFMLVYLFLRHAEQFYNHPSTASSRRWSNLSRWIFREFNEVEHLFRHRINNSVLHASDYVKQFPSPIISIIAKFISFVSGGFAAILIIIAFLEESLLEGHIFGRNLFWYAAVFGTITAISRAAIANELLVLDPEGAISMVVQHTHYMPKRWRGKESTEKVRIEFETLFQYTGMMLLEEMASIFLTPYLLLFIVPKRVDDILQFIADFTVNVEGVGHVCSYSSFDFQEHGNSNYGSPYNAPRSRRSSQGKMEKSFLSFQSSYPSWEPNAQGKRFSLNLRTFREQKLRVHGNRHPASSPSRMFRDSPTPNMGSNGDRNRFISRESPYSTSVTDNHLSSLWLIETIQNNHPYLLDWYYTSQPHDTTLRDVVPSEPFGGIEHHSREHWMPNLTQNEPVYEENSHEYLEVRAVSQLGASTSAPIFRESLIQDLNHNELSPSARSPWWDRSGPQGGHAQTSFFEPPDFNQQAAFGYHDKYSDRGSEDQDHEQRFYWRDYNKLSRTACTDDDLEAGEFKLHFDDIYSRPPDTPTVNVQTFE* 868
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g1044 867 MobiDBLite consensus disorder prediction 769 792 - -
Lja1g1044 867 Pfam Autophagy protein ATG9 63 557 IPR007241 GO:0006914
Lja1g1044 867 PANTHER AUTOPHAGY-RELATED PROTEIN 9 1 861 - -
Lja1g1044 867 MobiDBLite consensus disorder prediction 619 650 - -
Lja1g1044 867 MobiDBLite consensus disorder prediction 630 650 - -
Lja1g1044 867 PANTHER APG9 AUTOPHAGY 9 1 861 IPR007241 GO:0006914
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g1044 Lja-Chr1 10401321 10409060 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g1044 K17907 - gmx:100777405 1393.25
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g1044 1 10401321 10409060 Lja1g1044 1 10401321 10409060 ECH
Lja1g1044 1 10401321 10409060 Lja5g1868 5 22504442 22511985 PCT