Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g1858 ATGGATTTCCTGGATAAGCTGAAATTGCGGAAGAAGAAGAAGGAAGAGAAAGAAGCTGAAGCCCCTCCTGTTTCATGGTTCGAAACCTCTGTCTCTGTTTCTCGCCGCGTCCAGTTTGAACCCAATGGCCATCTCTCAGTAGAGCTTGTTGGTGATACTAGACCATTTTACCACAGGGTATTTGAGTCTTTCCTGAATAAATTTTTCCCCTCAGGATATCCATACAGTGTCAATGAAGGGTACTTCAGGTTCACACAGTTTCGAGCACTGCAGCACATTGCCAGTTCAGCACTATCGGTGCTATCAACCCAGTCACTGCTATTTGCTGCAGGCTTGCGGCCCACTCCTGCACAAGCAACTGCTGTTAGTTGGATTCTAAAGGATGGTATGGAACATTTAGGGAACCTAATATGTAGTAATTTGGGTGCAAGAATGGATTCAGAGCCCAAACATTGGAGAGTTCTAGCTGATGTGCTCTATGATTTAGGCACTGGCTTGGAAGTGCTTTCTCCCTTATGTCCATATCTTTTTTTTGAGATGGCAGGCCTAGGCAATTTTGCGAAGGGGATGGCAGTTGTTGCAGCAAAAGCTACAAGGTTACCTATATATTCTTCATTTGCTAAAGAAGGAAATCTCAGTGATCTATATGCTAAAGGGCATGCTATTTCAACTGTGTTTAATGTTATTGGAATTGGAGTTGGGATTCAATTAGCATCTACTATATGTGCGTCAATGCAGGGAAAGTTGGTTGTAGGGCCTCTACTTTCAATGATACATGTATACAGCGTTTCTGAACAAATGAGAGCAACTCCTGTGAACACCTTAAATCCACAAAGAACTGCAATGGTTGTTGCTGATTTTCTCAAGGCAGGAAATGTATCAAGCCCTACTGATCTAAGATACCGCGAAGATTTGTTATTTCCTGGGCGGCTCATCGAAGATGCAGGAAATGTAAGAGTGGGAAGGGCTTTGCACAAGGCTATTAAGCCTTCAAGGCTTGTAGAACTACAACAAGTGTTTCCAGGGGAGAAGTTTCTTTTAAATCGCGAAAATAGATGCATTGACATGGTGTTGGAGCAAGATGCTACTGGTGAAGATGCATTGAGAGGGTGGCTAGTTTCTGCATATGCTGTACAAATTGACAAGTCCTCTCATGAACTAAGTGCCAGTGTTATGCTACAGGCCTGTGAGAAGATGAATGAGGTCTTCCCTGTGTTTTTAAAAGAATTACAGAATAAAGGATGGCATACAGATCGTTTTATGGATGGAACTGGAAGCCGCTTTGCACTGTAA 1293 0.4292 MDFLDKLKLRKKKKEEKEAEAPPVSWFETSVSVSRRVQFEPNGHLSVELVGDTRPFYHRVFESFLNKFFPSGYPYSVNEGYFRFTQFRALQHIASSALSVLSTQSLLFAAGLRPTPAQATAVSWILKDGMEHLGNLICSNLGARMDSEPKHWRVLADVLYDLGTGLEVLSPLCPYLFFEMAGLGNFAKGMAVVAAKATRLPIYSSFAKEGNLSDLYAKGHAISTVFNVIGIGVGIQLASTICASMQGKLVVGPLLSMIHVYSVSEQMRATPVNTLNPQRTAMVVADFLKAGNVSSPTDLRYREDLLFPGRLIEDAGNVRVGRALHKAIKPSRLVELQQVFPGEKFLLNRENRCIDMVLEQDATGEDALRGWLVSAYAVQIDKSSHELSASVMLQACEKMNEVFPVFLKELQNKGWHTDRFMDGTGSRFAL* 431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g1858 430 PANTHER RUS1 FAMILY PROTEIN C16ORF58 1 429 IPR006968 -
Lja5g1858 430 Pfam Vitamin B6 photo-protection and homoeostasis 59 290 IPR006968 -
Lja5g1858 430 PANTHER PROTEIN ROOT UVB SENSITIVE 2, CHLOROPLASTIC 1 429 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g1858 Lja-Chr5 22062808 22069852 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g1858 - - gmx:100814176 711.835
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g1858 5 22062808 22069852 Lja5g1858 5 22062808 22069852 ECH
Lja1g1037 1 10317110 10321068 Lja5g1858 5 22062808 22069852 PCT