Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g1566 ATGTCAACCGCTACCACCGGTGGCTACGGCACGGTCTCCGCCGCCACCACCACCACATCACAACCACCACCGCCATCCACCTCCAACCTCATCGCCACTCCCCGCTCATGGCGCGAGTTCCTCGACATCTCCGCCCTCTCCCGCCCCTACTCCTACGACGACGCCATGATCCGCCTCCGGCGAAACCTCAGCTACTTCCGCTTCAACTACGCCGCCGTTTCCCTCCTGATCATCTTCCTCACCCTGCTGTGGCACCCCGTCTCCATGATCGTCTTCCTGATCCTGCTCGTCGCCTGGTTCTTCCTCTACTTCTCCCGCGACGGCCCACTCGTCGTCCTCAACCGAACCGTCGACGACAGGACCGTGCTCTGCGTTCTGGGCCTCGTCACCGTCGTCGGGCTTGTGTGGACCCACGTGGGGCTCAATGTGCTGGTGGCGCTGATCGTGTGCGTGGTCGTTGTTGGGTTGCATGCGGCGTTTCGGGTCATTGAGGACTTGTTTCATGATGAGGAGAGTGGGTTGCTCTCCGTTGTTGGAAGTCAGCCTCTGAGAACAAATTATACTCCGATTTGA 573 0.6038 MSTATTGGYGTVSAATTTTSQPPPPSTSNLIATPRSWREFLDISALSRPYSYDDAMIRLRRNLSYFRFNYAAVSLLIIFLTLLWHPVSMIVFLILLVAWFFLYFSRDGPLVVLNRTVDDRTVLCVLGLVTVVGLVWTHVGLNVLVALIVCVVVVGLHAAFRVIEDLFHDEESGLLSVVGSQPLRTNYTPI* 191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g1566 190 PANTHER PRENYLATED RAB ACCEPTOR 1-RELATED 24 188 IPR004895 -
Lja5g1566 190 MobiDBLite consensus disorder prediction 1 30 - -
Lja5g1566 190 Pfam PRA1 family protein 31 171 IPR004895 -
Lja5g1566 190 PANTHER PRA1 FAMILY PROTEIN 24 188 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g1566 Lja-Chr5 16584939 16586002 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g1566 K20359 - gmx:100809527 237.654
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g1905 5 23339468 23340461 Lja5g1566 5 16584939 16586002 ECH
Lja5g1566 5 16584939 16586002 Lja5g1566 5 16584939 16586002 ECH