Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g1354 ATGGCTCCTAACATCACCACCGTTTCAACCAAAACCACCACCGCTCAAGCCAAAGGCACCGGTGACCGTGCTTTTGTGACCTTCCTGGCCGGTAACGGTGACTACGTGAAGGGGGTTGTTGGCTTGGCCAAAGGGTTAAGAAAAGCCAAGACCATGTACCCTCTTGTGGTTGCAGTGTTACCTGATGTTCCGGCGGAGCACCGTAAGATCCTCACCTCCCAAGGCTGCATTGTTCGAGAGATCGAACCTGTTTACCCTCCAGAGAATCAGACCCAGTTCGCCATGGCGTATTATGTCATCAACTACTCCAAACTACGTATATGGGAGTTTGTGGAGTATAGCAAGATGATTTACTTAGACGGTGACATCCAAGTGTTTGAAAACATTGATCACCTGTTTGATTTGCCCAACAATTATTTCTATGCGGTGAAGGACTGTTTCTGTGAGCCCAGTTGGCGCCACACCAAGCAGTACCAGATCGGTTACTGCCAGCAGTGCCCTGATAAGGTTCAGTGGCCTAAAAATTTTGGGCCTAAGCCTCCTCTGTATTTCAATGCTGGCATGTTTGTTTATGAGCCCAATCTTACTACCTACCGTGACCTCCTTCAAACTGTCCAAGTCACCAAGCCCACTTCATTTGCTGAGCAGGATTTCTTGAACATGTACTTCAAGGACAAGTACAGGCCCATACCAAATGTTTACAATCTTGTGCTGGCCATGCTGTGGCGTCACCCTGAGAATGTTGAGCTTGACAAAGTGAAAGTGGTTCACTATTGTGCTGCTGGATCTAAGCCTTGGAGGTATACTGGAGAAGAGGAGAACATGGAGAGAGAAGACATCAAGATGCTGGTGAAGAAGTGGTGGGACATATATGATGATGAGAGTTTGGATTACAACAATACCGTCAATGAGGATCGTTTCACGGCGGCGCTTCTGGAGGCTGGTGGTGTCAAGTTTATCCCCGCCCCATCCGCCGCTTAG 981 0.4842 MAPNITTVSTKTTTAQAKGTGDRAFVTFLAGNGDYVKGVVGLAKGLRKAKTMYPLVVAVLPDVPAEHRKILTSQGCIVREIEPVYPPENQTQFAMAYYVINYSKLRIWEFVEYSKMIYLDGDIQVFENIDHLFDLPNNYFYAVKDCFCEPSWRHTKQYQIGYCQQCPDKVQWPKNFGPKPPLYFNAGMFVYEPNLTTYRDLLQTVQVTKPTSFAEQDFLNMYFKDKYRPIPNVYNLVLAMLWRHPENVELDKVKVVHYCAAGSKPWRYTGEEENMEREDIKMLVKKWWDIYDDESLDYNNTVNEDRFTAALLEAGGVKFIPAPSAA* 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g1354 326 Pfam Glycosyl transferase family 8 27 269 IPR002495 GO:0016757
Lja5g1354 326 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 21 297 IPR029044 -
Lja5g1354 326 PANTHER GALACTINOL SYNTHASE 2 1 326 IPR030515 GO:0006012|GO:0047216
Lja5g1354 326 SUPERFAMILY Nucleotide-diphospho-sugar transferases 26 297 IPR029044 -
Lja5g1354 326 CDD GT8_Glycogenin 23 293 - -
Lja5g1354 326 PANTHER GLYCOGENIN SUBFAMILY MEMBER 1 326 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g1354 Lja-Chr5 13580830 13582569 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g1354 1 326 Glycosyltransferase AT1G56600 75.298 0.0 528
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g1354 K18819 - gmx:548050 600.897
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g1354 5 13580830 13582569 Lja5g1354 5 13580830 13582569 ECH
Lja1g0531 1 4867007 4869103 Lja5g1354 5 13580830 13582569 PCT