Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g1346 ATGTTCCAGTTACACTCTCTGATAATGGCCAAGGGAGCTTCTTTGTGCCTCTTGTACCTCTCTTTTCTCATCATCTCATGTTCTGGAGACACTTCAACTTCTACATCTTCTGGAACCATATCACTCCTTCACCAAAACGAGGTTTCCCCATCTCAAGTTAGTGAAAGGGTGTCCAAATATCTAGAAGCAAGAGAAAGAATGGCTGCATTGTATGCAGAAATGCACACAACAGAAGATTTTGCACTGAAAGAGCTCAAAAGGGAAGAGATATCAAGAAATTTCCTTAGAAGAAGAACCTTAGATGACACAAACAACCCAACAAACACAGTTTTCCCCACAAATCCAACTACACCAATCATCACACCCCCAGATAATACACCAACCATCATTGCAGTTCCTTCCACAAACCCTGTCACAATTTCCCCCACAAATCCAGCTGCAGTTCCTGCAACAGTTACTCCAACCACAAATTTACCTTCACCTCCCACAAATCCAACATTTTCACCAGTTCCAGTAACCAATCCAGCTACAACCCCCACAACAGTTCCAGTAGCACCACCAGTAACACCAACAACTCCCACAACAGTTCCAGGAGCACCACCAGTAACACCTTCTTTTCCACCTCCATCAGGAAGTGTTCCTGTCATAAACCCTCAACCTCCTCCTGCAAACACAAATAACCCTCCTTCCACTCAGGGGCAGAGTTGGTGTGTTGCAAAGACAGGAGCTCCACAAGCTTCCCTTCAAGCAGCCCTGGACTATGCTTGTGGAAAGGGTGCAGATTGTGCTGCTTTACAACAGGGTGGAAGTTGTTACAGTCCTGTTACTTTGCAAAACCATGCTTCTTATGCCTTCAACAGCTACTATCAGAAGAATCCAGCTCCAACAAGTTGTGATTTTGGAGGGGCTGCCACCTTAGTTAACACCAACCCAAGTTCAGGATCTTGCATTTTCCCATCATCATCATCAGCATCAGCAACAACGCCAATGACACCATCTCTAACACCACCTACACAATCAACTCCTCTGAGTCCAACAATAGGTGCACCATCAACTCCTAAATCACCTACTCCACTATCAATTCCTACAGCTCCACCAACAACACCCTCAGGATCCAGCACTTTTGGCTATGGCACTCCACCTTCAGTGTTGAATTCAAGCAACCCAGCCTCAGGTACCATGCCAGATTTTGGGACTGATAGCCCTCCCATTGTGAATACCACATCAACCTCACATTCCATTGGTCTGAAACCTTTCACTGGCTGCATTGTTCTGATGTTATCATTTGTCGCTGCGAGACTCAGTATGTGCCAGTAG 1317 0.4563 MFQLHSLIMAKGASLCLLYLSFLIISCSGDTSTSTSSGTISLLHQNEVSPSQVSERVSKYLEARERMAALYAEMHTTEDFALKELKREEISRNFLRRRTLDDTNNPTNTVFPTNPTTPIITPPDNTPTIIAVPSTNPVTISPTNPAAVPATVTPTTNLPSPPTNPTFSPVPVTNPATTPTTVPVAPPVTPTTPTTVPGAPPVTPSFPPPSGSVPVINPQPPPANTNNPPSTQGQSWCVAKTGAPQASLQAALDYACGKGADCAALQQGGSCYSPVTLQNHASYAFNSYYQKNPAPTSCDFGGAATLVNTNPSSGSCIFPSSSSASATTPMTPSLTPPTQSTPLSPTIGAPSTPKSPTPLSIPTAPPTTPSGSSTFGYGTPPSVLNSSNPASGTMPDFGTDSPPIVNTTSTSHSIGLKPFTGCIVLMLSFVAARLSMCQ* 439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g1346 438 Pfam X8 domain 236 305 IPR012946 -
Lja5g1346 438 MobiDBLite consensus disorder prediction 349 365 - -
Lja5g1346 438 MobiDBLite consensus disorder prediction 100 115 - -
Lja5g1346 438 MobiDBLite consensus disorder prediction 319 334 - -
Lja5g1346 438 PANTHER CARBOHYDRATE-BINDING X8 DOMAIN PROTEIN 49 403 - -
Lja5g1346 438 SMART X8_cls 235 318 IPR012946 -
Lja5g1346 438 PRINTS Proline rich extensin signature 158 175 - -
Lja5g1346 438 PRINTS Proline rich extensin signature 103 115 - -
Lja5g1346 438 PRINTS Proline rich extensin signature 138 154 - -
Lja5g1346 438 PRINTS Proline rich extensin signature 115 136 - -
Lja5g1346 438 PRINTS Proline rich extensin signature 179 204 - -
Lja5g1346 438 PANTHER GLUCAN ENDO-1,3-BETA-GLUCOSIDASE BG1-RELATED-RELATED 49 403 IPR044965 GO:0004553|GO:0005975
Lja5g1346 438 MobiDBLite consensus disorder prediction 319 396 - -
Lja5g1346 438 MobiDBLite consensus disorder prediction 366 396 - -
Lja5g1346 438 MobiDBLite consensus disorder prediction 100 124 - -
Lja5g1346 438 Gene3D - 230 330 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g1346 Lja-Chr5 13512794 13515270 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g1346 220 321 Glycoside Hydrolase AT2G05790 51.923 4.53e-26 108
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g1346 - - lja:Lj5g3v1531220.1 602.438
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g1346 5 13512794 13515270 Lja5g1346 5 13512794 13515270 ECH
Lja1g0516 1 4669900 4672815 Lja5g1346 5 13512794 13515270 PCT