Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g0516 ATGGCCAAGGAAGCTTCTCTATGCCTCTTGCTCCTCTCTGTTCTTATTATTAGCTGCTCTGGAACTCTGGTGGGGTTTTCATATCATGAGACAAGAGATACTCCATCTACAACATCTGCTGGAAACACATTCTTCCAGAAAGACAAGATCTTCCAGTCTCAGATTTGGGTTTCTGTAAAGGATCTCAAGATTTTGAGCCCTCTGAGTCTGACCAACTCTGACAAGTTAGTTGATTTCTTCTTAAATAAAATCCTAGTTGAAAATGTTGTTTCTGGTGTTTCATGGGAAAAAGCTCATCTTGTGAGCATTCTTCCACTAGCAGACACCATTAGCATAATTGCTAGATGTGATGGTGGGAGTTTAGGTCAGAATGAGATACCTTTACTTTTTTCCACTCTGAAATCAGTTCATTCAGTTCTCACCAAGCTTCAATTAAGCAGTGAAGTAAAAATCTCGGTAGCGTTTCCGCTGTCATTCTTAGAGAATTTGAGTCCAATATATGAAAATGATCTCCTTAGGGTTCTTGGGTTTATAAAGAAAATAAATTCAATTATCATGATAGAAGATAGCATTGATGGGGAATTAGGCATGGATGTTAGCTTTGTTCAATCTGTTATCAAGCGAGCCTCCCTTGCTGCTTCTATTCTTCCATGCAAAGATGTTCCAATAGTTCTGACAATCAAGAACTCAATGATTTCCAGTTCATTGGAATTAGCTCAATTTAGTAAAACCGTATCCAAGTATCTTGAAGCAAACTCTCTTATTACAAAAAGAGTAGTTGCATTATATGTAGAAGCACACACAAGTGTACAGAAAGGGATCAGAAGAGAAGAGGAAGAGATATTAGAGGTTAGCAAAGTCCATATCAGAAGAACTCTAAAAGAAGCAAGCAGCTTACCTACCCCAGTTTCCCCTATAAATCCAGCATCAGGTGCAGTTATCGCACCCCCAGAAACACCAGCCATCATCACAGTTCCTTCCACCAATCCTGTCACAGTGTCTCCCACCAATCCTACCACACCTGTTCCCTTAACCCCTACAAATCCTGCCAATTCTCCAGTACCGGTCACCAATCCGGTCACAGCCCCGACTACATTTCCTGGTGCACAACCAGTTACCAACCCTATGGCTTCTTACCCACCCCCATCAGGAAGTGTTCCTGGGGTAAACAACCCCCAGCCTCCTCCTCAAAACACAAATGCTCAAGGGAGCTGGTGTGTGGCGAAGACTGGCATTCCGGAAACAACTCTACAATTAGCACTGGACTATGCTTGTGGAAAGGGGACTGCAGATTGTTCACAGATACAGCAAGGTGGGAGTTGTTACAATCCAAATTCATTACAAAACCATGCTTCTGTTGCCTTCAATAGCTACTACCAAAAGAATCCTGCTCCAACAAGCTGTGACTTTGGAGGAGTAGCCACCATAGTTACTACCAACCCGAGTTCTGGTTCTTGCATTTATCCATCATCTTCAGGAGGCGCTGGCTCATCCGGCTCTATTAGTGCTACCCCACCTTCAGATTTTGGGTCCTCAAGCCCTCCTGATTTGAGTGCCTCACAGTCAGCTGGCGTGAGACCTTTTATTAGCTGCATGGTTCTGGTGATGTCATTGGTGAGTGGAAGACTCATTACGAGCATTTAG 1644 0.4319 MAKEASLCLLLLSVLIISCSGTLVGFSYHETRDTPSTTSAGNTFFQKDKIFQSQIWVSVKDLKILSPLSLTNSDKLVDFFLNKILVENVVSGVSWEKAHLVSILPLADTISIIARCDGGSLGQNEIPLLFSTLKSVHSVLTKLQLSSEVKISVAFPLSFLENLSPIYENDLLRVLGFIKKINSIIMIEDSIDGELGMDVSFVQSVIKRASLAASILPCKDVPIVLTIKNSMISSSLELAQFSKTVSKYLEANSLITKRVVALYVEAHTSVQKGIRREEEEILEVSKVHIRRTLKEASSLPTPVSPINPASGAVIAPPETPAIITVPSTNPVTVSPTNPTTPVPLTPTNPANSPVPVTNPVTAPTTFPGAQPVTNPMASYPPPSGSVPGVNNPQPPPQNTNAQGSWCVAKTGIPETTLQLALDYACGKGTADCSQIQQGGSCYNPNSLQNHASVAFNSYYQKNPAPTSCDFGGVATIVTTNPSSGSCIYPSSSGGAGSSGSISATPPSDFGSSSPPDLSASQSAGVRPFISCMVLVMSLVSGRLITSI* 548
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g0516 547 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 19 - -
Lja1g0516 547 PANTHER CARBOHYDRATE-BINDING X8 DOMAIN PROTEIN 141 515 - -
Lja1g0516 547 PANTHER GLUCAN ENDO-1,3-BETA-GLUCOSIDASE BG1-RELATED-RELATED 141 515 IPR044965 GO:0004553|GO:0005975
Lja1g0516 547 SMART X8_cls 404 488 IPR012946 -
Lja1g0516 547 Pfam X8 domain 405 475 IPR012946 -
Lja1g0516 547 Gene3D - 398 492 - -
Lja1g0516 547 MobiDBLite consensus disorder prediction 366 401 - -
Lja1g0516 547 MobiDBLite consensus disorder prediction 374 394 - -
Lja1g0516 547 MobiDBLite consensus disorder prediction 497 518 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g0516 Lja-Chr1 4669900 4672815 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g0516 93 491 Glycoside Hydrolase AT2G05790 26.442 2.54e-26 110
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g0516 - - gmx:100809473 512.301
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g0516 1 4669900 4672815 Lja1g0516 1 4669900 4672815 ECH
Lja1g0516 1 4669900 4672815 Lja5g1346 5 13512794 13515270 PCT