Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g1324 ATGAAGCTCGTTGACTCTCTGCTTCTCTTTGCTTTGCCTCTGGCTCTGCTCTTAACCACTGCTTTCTCATCAGATCCTGACTACCTTCAAGATCTCTGTGTTGCCGACCCTGCCTCAGGTGTGCCAGTGAATGGATTCACTTGCAAAGAAGCATCCAAGGTGAATGCCTCTGATTTCTTCTCCAACATACTAGCCAAGCCAGGAGCCACCAACAACACCTTTGGTTCCTTGGTGACCGGAGCCAACGTTCAGAAAGTCCCAGGACTCAACACACTTGGAGTCTCTCTGGCAAGGATTGATTATGCCCCAGATGGCCTCAACCCGCCCCACACCCACCCACGCGCCACAGAGGTGGTGTTTGTGCTTGAAGGGGAACTAGATGTTGGGTTCATAACCACAGGCAATGTGCTCATATCAAAGCACATAGTCAAGGGTGATATATTTGTGTTCCCAAAAGGCTTGCTTCACTTCCAAAAGAACAATGGCAAGGTTCCTGCTGCGGTGCTTTCAGCCTTCAACAGCCAACTTCCGGGGACACAGTCAATTGCAACCACCTTGTTTGCCTCAACGCCTACTGTGCCAGACAATGTTTTGACCAAGACCTTCCAAGTTGGTACCAAGCAGATTGAGAAAATCAAGTCTAGGCTTGCACCCAAGAAGTAA 663 0.4947 MKLVDSLLLFALPLALLLTTAFSSDPDYLQDLCVADPASGVPVNGFTCKEASKVNASDFFSNILAKPGATNNTFGSLVTGANVQKVPGLNTLGVSLARIDYAPDGLNPPHTHPRATEVVFVLEGELDVGFITTGNVLISKHIVKGDIFVFPKGLLHFQKNNGKVPAAVLSAFNSQLPGTQSIATTLFASTPTVPDNVLTKTFQVGTKQIEKIKSRLAPKK* 221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g1324 220 PANTHER GERMIN-LIKE PROTEIN 15 218 - -
Lja5g1324 220 Pfam Cupin 64 209 IPR006045 -
Lja5g1324 220 SMART Cupin_1_3 61 210 IPR006045 -
Lja5g1324 220 Gene3D Jelly Rolls 24 218 IPR014710 -
Lja5g1324 220 PANTHER GERMIN-LIKE PROTEIN SUBFAMILY 3 MEMBER 3 15 218 - -
Lja5g1324 220 ProSitePatterns Germin family signature. 105 118 IPR019780 GO:0030145
Lja5g1324 220 SUPERFAMILY RmlC-like cupins 55 215 IPR011051 -
Lja5g1324 220 PRINTS Germin signature 140 160 IPR001929 GO:0030145
Lja5g1324 220 PRINTS Germin signature 173 188 IPR001929 GO:0030145
Lja5g1324 220 PRINTS Germin signature 110 130 IPR001929 GO:0030145
Lja5g1324 220 CDD cupin_OxOx 25 216 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g1324 Lja-Chr5 13265328 13267295 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g1324 24 220 Miscellaneous Gene Families AT3G05930 58.586 7.30e-82 241
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g1324 - - gmx:100791828 360.918
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g1324 5 13265328 13267295 Lja5g1324 5 13265328 13267295 ECH
Lja1g0501 1 4500664 4502547 Lja5g1324 5 13265328 13267295 PCT