Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g0501 ATGAAGCTGGTGGTGTTGCTGCTTCTGACATTGACCACCTTCACTGCAGCATCAGATCCTGATTCTCTACAAGATATCTGTGTCGCAGACCTATCCTCCGCAATTAAGGTGAATGGATTCGTCTGCAAAAGCGCTTCCGCAGTAAAAGAAACTGATTTCTTCTCAGCCATACTAGCCAAACCAGGTGCAACAAACACCACCTTCGGCTCTGTGGTGACCGGAGCCAACGTTGAGAAAATCCCAGGACTCAACACTCTTGGCGTGTCGATTTCAAGGATTGATTATGCCCCCGGCGGCCTCAACCCACCTCACACTCACCCACGTGCCACCGAGGTGGTGTTTGTGCTCGAAGGACAATTAGATGTGGGGTTCATCACCACAGCCAATGTGCTCATAGCAAAGACCATAAACAAGGGTGAGATATTTGTGTTCCCAAAAGGCTTGGTTCACTACCAGAAGAACAATGGTTACTGGCCTGCTTCTGTGATTTCAGCCTTCAATAGCCAATTGCCTGGCACAGTGTCCATTCCTCTGGCTTTGTTTGCAGCCAAGCCACCGGTTCCAGACAATGTGTTGACCAAGGCTTTTCAGACAAGTACTGAGGAGGTTGAAAAAATCAAGGCTAACCTTGCACCCAAGAAGTAG 645 0.4884 MKLVVLLLLTLTTFTAASDPDSLQDICVADLSSAIKVNGFVCKSASAVKETDFFSAILAKPGATNTTFGSVVTGANVEKIPGLNTLGVSISRIDYAPGGLNPPHTHPRATEVVFVLEGQLDVGFITTANVLIAKTINKGEIFVFPKGLVHYQKNNGYWPASVISAFNSQLPGTVSIPLALFAAKPPVPDNVLTKAFQTSTEEVEKIKANLAPKK* 215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g0501 214 Pfam Cupin 58 203 IPR006045 -
Lja1g0501 214 PANTHER GERMIN-LIKE PROTEIN SUBFAMILY 2 MEMBER 4 5 211 - -
Lja1g0501 214 SUPERFAMILY RmlC-like cupins 19 210 IPR011051 -
Lja1g0501 214 PRINTS Germin signature 167 182 IPR001929 GO:0030145
Lja1g0501 214 PRINTS Germin signature 104 124 IPR001929 GO:0030145
Lja1g0501 214 PRINTS Germin signature 134 154 IPR001929 GO:0030145
Lja1g0501 214 SMART Cupin_1_3 55 204 IPR006045 -
Lja1g0501 214 ProSitePatterns Germin family signature. 99 112 IPR019780 GO:0030145
Lja1g0501 214 Gene3D Jelly Rolls 18 212 IPR014710 -
Lja1g0501 214 CDD cupin_OxOx 19 210 - -
Lja1g0501 214 PANTHER GERMIN-LIKE PROTEIN SUBFAMILY 3 MEMBER 3 5 211 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g0501 Lja-Chr1 4500664 4502547 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g0501 4 214 Miscellaneous Gene Families AT3G05930 54.717 7.38e-83 244
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g0501 - - gmx:100791628 338.191
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g0501 1 4500664 4502547 Lja1g0501 1 4500664 4502547 ECH
Lja1g0501 1 4500664 4502547 Lja5g1324 5 13265328 13267295 PCT