Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g1295 ATGGTACTCTCATTGTCCTCCATTGTTGTATCTTTCTCTAGCTTCATATTTTGCTTCACAATCCTGCTTCACTCCTCATCATTTGGAGCTGAAGCACGTTACTCACCCATTACACCAATCTCTTCTCTCATTAGCAAAAGCCTTTTTGATTCAATTTTCCTTCACAAAGATGACTCTGCATGCCCTGCTAAAAACTTCTACACCTATGAGTCTTTCATTCAAGCTTCCAAATGCTTCCCTGCATTTGGCGCTACAGGTAGTTTAACCACGCGCAAGCGTGAGATTGCTGCTTTTCTTGCCCAAATTTCACATGAAACCACAGGTGGGTGGGCTACTGCACCTGATGGACCATATGCTTGGGGATTGTGCTTCAAGGAAGAAGTTAGTCCTCAAAGTGATTACTGTGATTCCACCAACAAAGAATGGCCTTGTTATCCAGGGAAAAGTTACAAAGGCAGAGGACCAATTCAACTTTCCTGGAACTACAACTATGGACCAGCTGGGAAGGCTTTGGGATTTGATGGATTGAGAAATCCGGAGATCGTGACCAATAGTTCATTGGTTGCATTTAGAACTTCTCTGTGGTTTTGGATGACGGAGCGAAAGCCGAAACCTTCTTGCCACAATGTGATGATTGGGAAATATGTGCCAACTCAAGCTGACATAGCAGCTAACCGAACTGCAGGGTTTGGTCTGGTGACTAACATCATCAATGGTGGACTTGAGTGTGGGCTTTCTGATGATGGAAGGGTGAATGATCGGATTGGATACTTTGAAAGATATGCAGGGTTGTTTAATGTGGATACAGGTCCTAACTTGGATTGTGCATATCAGAAATCCTTCTAA 846 0.435 MVLSLSSIVVSFSSFIFCFTILLHSSSFGAEARYSPITPISSLISKSLFDSIFLHKDDSACPAKNFYTYESFIQASKCFPAFGATGSLTTRKREIAAFLAQISHETTGGWATAPDGPYAWGLCFKEEVSPQSDYCDSTNKEWPCYPGKSYKGRGPIQLSWNYNYGPAGKALGFDGLRNPEIVTNSSLVAFRTSLWFWMTERKPKPSCHNVMIGKYVPTQADIAANRTAGFGLVTNIINGGLECGLSDDGRVNDRIGYFERYAGLFNVDTGPNLDCAYQKSF* 282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g1295 281 ProSitePatterns Chitinases family 19 signature 2. 188 198 IPR000726 GO:0004568|GO:0006032|GO:0016998
Lja5g1295 281 PANTHER CHITINASE 10 15 281 - -
Lja5g1295 281 PIRSF Endochitinase 10 281 IPR016283 GO:0004568|GO:0005975
Lja5g1295 281 Gene3D - 47 281 - -
Lja5g1295 281 SUPERFAMILY Lysozyme-like 40 281 IPR023346 -
Lja5g1295 281 CDD chitinase_GH19 44 275 - -
Lja5g1295 281 ProSitePatterns Chitinases family 19 signature 1. 61 83 IPR000726 GO:0004568|GO:0006032|GO:0016998
Lja5g1295 281 Gene3D Endochitinase, domain 2 126 184 - -
Lja5g1295 281 PANTHER CHITINASE-RELATED 15 281 - -
Lja5g1295 281 Pfam Chitinase class I 43 275 IPR000726 GO:0004568|GO:0006032|GO:0016998
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g1295 Lja-Chr5 13035434 13036672 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g1295 15 281 Glycoside Hydrolase AT4G01700 69.288 6.92e-149 416
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g1295 - - gmx:100785397 479.559
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g0479 1 4289611 4291307 Lja5g1295 5 13035434 13036672 PCT