Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g0479 ATGACATTATTCTCCTTCTCCTTTATTGGTCCCTTTCTCTCCACCTTAATTTTTTGCTTCATTGCTCTTTCCTACTCTGCATCTCTGGGAGCTGAAGAATGGGGCTCACCACCTATTAGACCCATCTCTTCTCTAATTAGAAAAAAGCTTTTTCACTCCATTTTCCTCCACAAAGATGACAGTGCATGCCCTGCAAAGAACTTCTACTCCTACAAGTCCTTCATCCATGCATCCAAACACTTCCCTAAATTCGGCACCACAGGTTCTTTAGCCACGCGCAAGCGTGAAATCGCTGCATTCCTAGCTCAGATTTCCCATGAAACCACAGGTGGCTGGGCCACTGCACCTGATGGCCCATATGCTTGGGGCTTGTGCTTCAAGGAAGAAATCAATCCTCAGAGCAACTACTGTGATGCTAGTAACAAAGAATGGCCTTGCTACCCTGGCAAAAGTTACAAAGGAAGAGGACCAATTCAACTTTCTTGGAATTTCAACTATGGGCCAGCAGGGAAGGCTTTAGGATTTGATGGGCTGAGGAACCCTGAGATTGTGTCTAACAATTCTGTGATTGCCTTCAAAACTGCTCTGTGGTTTTGGATGACAGAGAGAAAGCCAATACCTTCTTGCCACAATGTGATGGTTGGAAAATATGTGCCAACAGAAGGTGACATAGCAGCTAACAGAACAGAAGGTTATGGCTTGGTGACTAACATAATCAATGGTGGACTTGAATGTGGAATTCCCGGTGATGCAAGAGTGGATGATAGGATTGGATTTTTCAAAAGATATGCCAAGTTATTCAATGTGGACACTGGACCTAACTTGGATTGTGCATATCAAAAATCCTTTTAA 852 0.4366 MTLFSFSFIGPFLSTLIFCFIALSYSASLGAEEWGSPPIRPISSLIRKKLFHSIFLHKDDSACPAKNFYSYKSFIHASKHFPKFGTTGSLATRKREIAAFLAQISHETTGGWATAPDGPYAWGLCFKEEINPQSNYCDASNKEWPCYPGKSYKGRGPIQLSWNFNYGPAGKALGFDGLRNPEIVSNNSVIAFKTALWFWMTERKPIPSCHNVMVGKYVPTEGDIAANRTEGYGLVTNIINGGLECGIPGDARVDDRIGFFKRYAKLFNVDTGPNLDCAYQKSF* 284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g0479 283 Gene3D - 49 283 - -
Lja1g0479 283 PIRSF Endochitinase 16 283 IPR016283 GO:0004568|GO:0005975
Lja1g0479 283 Pfam Chitinase class I 46 277 IPR000726 GO:0004568|GO:0006032|GO:0016998
Lja1g0479 283 ProSitePatterns Chitinases family 19 signature 2. 190 200 IPR000726 GO:0004568|GO:0006032|GO:0016998
Lja1g0479 283 PANTHER OS05G0138200 PROTEIN 13 283 - -
Lja1g0479 283 ProSitePatterns Chitinases family 19 signature 1. 63 85 IPR000726 GO:0004568|GO:0006032|GO:0016998
Lja1g0479 283 PANTHER CHITINASE-RELATED 13 283 - -
Lja1g0479 283 CDD chitinase_GH19 46 277 - -
Lja1g0479 283 SUPERFAMILY Lysozyme-like 42 283 IPR023346 -
Lja1g0479 283 Gene3D Endochitinase, domain 2 128 186 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g0479 Lja-Chr1 4289611 4291307 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g0479 41 283 Glycoside Hydrolase AT4G01700 74.897 3.75e-145 407
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g0479 - - gmx:100784196 484.952
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g0479 1 4289611 4291307 Lja5g1295 5 13035434 13036672 PCT