Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g1293 ATGAAGAGACTTTCAACTTCAACTCTGCTGGATGTGTTTCTGGTACTTGCATTGTTCAGTTGTTGCCCATGGACAGTGTGGAGCAGCTCAAGCTGCAATCAGATAAACTTGAAGGAAGTTCGGCCGCATAGTGTTAGTATTACAGAATTTGGAGCAGTTGGCGATGGGATCACTCTCAATACCAAGGCATTTCAGAATGCCATCTTCTATCTCAATTCCTTTTCAGACAAAGGTGGAGCCAAGCTTTTTGTCCCAGCTGGCCGGTGGTTAACCGGAAGTTTTGATCTAATCAGCCACCTCACTTTGTGGTTAGACAAGGATGCTGTAATTCTTGGATCAACGAACTCTGATGATTGGCCAGTTGTGGATCCCCTACCATCATATGGTCGTGGAAGGGAGTTGCCGGGTGGAAGGCATAGAAGCCTCATTTACGGACGCAATTTGACTGATGTCATTATAACAGGTAATAATGGAACTATAGATGGTCAAGGGAGTATCTGGTGGAGCAAATTTGAGAATAAAACATTGGATTATACACGTCCTCATCTGGTTGAGTTGATGAATTCAACGGAGGTTCTCATTTCAAACTTAACCTTCTTGAATTCACCATTTTGGACTATTCATCCTGTATATTGCAGCCATGTTACAGTTCAGAATGTCACCATCCTTGCTCCTCTTAGTTCACCAAATACTGATGGGATTGATCCAGATTCTTCGGACGATGTATGCATTGAAGACTGTTATATAAGCACCGGTGATGACCTGATTTCCATCAAAAGTGGATGGGATCAATATGGCATTTCATTTGGTCGACCTAGTACAAACATCGTCATCCGCAGGCTCGTTGGGAAAACTACGAGTGCAGGAATCGCTATCGGAAGTGAGATGTCTGGAGGTGTGTCAGAAGTCCATGCAGAAGATATTTATATTTTTGATTCGCGCAGCGCAATCAGAATTAAGACTTCTCCTGGCAGGGGTGGTTATGTTAGAAATGTCTATATCTCTAACATGACCTTGGCTAATATAGATATTGCTATCAGGTTCACTGGTTTATATGGAGAACATCCAGATGAAGCTTATGACCCGGACGCCCTACCTCTAATTGAAAGAATTACTATCAAGGATGTGATAGGGGAAAATGTCAAACGCGCCGGCCTTATACAGGGCATAAAAGGTTATGACTTTGTCAATATCTGTCTATCCAACATTAGCCTTAATGTGAGCTCAAAAGTTCCATGGAACTGCTCTGACGTTAAAGGATACTCAGACTTGGTTTCGCCGGAAGTTTGTGAACCTCTCAAAGAGAGAATATTCCCTGAGCATTGGTCAGACTGTTACAAGCTGCCAAACCAGCTAAAGAGTTCAAGTGATAGAAGCAGAGGTGCTTGGTTGCGGTCTTGGTAA 1404 0.4302 MKRLSTSTLLDVFLVLALFSCCPWTVWSSSSCNQINLKEVRPHSVSITEFGAVGDGITLNTKAFQNAIFYLNSFSDKGGAKLFVPAGRWLTGSFDLISHLTLWLDKDAVILGSTNSDDWPVVDPLPSYGRGRELPGGRHRSLIYGRNLTDVIITGNNGTIDGQGSIWWSKFENKTLDYTRPHLVELMNSTEVLISNLTFLNSPFWTIHPVYCSHVTVQNVTILAPLSSPNTDGIDPDSSDDVCIEDCYISTGDDLISIKSGWDQYGISFGRPSTNIVIRRLVGKTTSAGIAIGSEMSGGVSEVHAEDIYIFDSRSAIRIKTSPGRGGYVRNVYISNMTLANIDIAIRFTGLYGEHPDEAYDPDALPLIERITIKDVIGENVKRAGLIQGIKGYDFVNICLSNISLNVSSKVPWNCSDVKGYSDLVSPEVCEPLKERIFPEHWSDCYKLPNQLKSSSDRSRGAWLRSW* 468
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g1293 467 SUPERFAMILY Pectin lyase-like 39 432 IPR011050 -
Lja5g1293 467 PANTHER OS07G0245200 PROTEIN 8 452 - -
Lja5g1293 467 SMART pbh1 300 321 IPR006626 -
Lja5g1293 467 SMART pbh1 329 350 IPR006626 -
Lja5g1293 467 SMART pbh1 239 271 IPR006626 -
Lja5g1293 467 SMART pbh1 273 294 IPR006626 -
Lja5g1293 467 SMART pbh1 212 238 IPR006626 -
Lja5g1293 467 Gene3D - 25 422 IPR012334 -
Lja5g1293 467 PANTHER PECTIN LYASE-RELATED 8 452 - -
Lja5g1293 467 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 32 - -
Lja5g1293 467 Pfam Glycosyl hydrolases family 28 139 419 IPR000743 GO:0004650|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g1293 Lja-Chr5 13022520 13026211 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g1293 1 467 Glycoside Hydrolase AT3G62110 69.053 0.0 647
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g1293 - - gmx:100786985 853.973
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g0477 1 4266263 4270235 Lja5g1293 5 13022520 13026211 PCT