Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g0477 ATGAGGAGACCTTCAATTCTAGTGGGTGTGCTTTTTCTTGCATTGTTCTGTTGTAGCCCATGGACAGTGTGGAGCAGCACGCTTTGCAAAAGAAAAAACTTGGAGAGAGTTCGACCTCACAGTGTCAGCATTACCGAATTTGGCGCAGTTGGGGATGGGATCACTCTCAACACAAAAGCATTTCAGAATGCCATCTTCTACCTGAATTCATTTGCAGATAAAGGTGGAGCAAAGCTTTTTGTCCCTGCCGGCCGGTGGTTAACCGGTAGTTTTGATCTCATCAGCCACCTAACTCTGTGGTTGGATAAGGATGCAGTGATTCTTGGATCAACGAACTCTGATGATTGGCCAGTTGTTGATCCTCTACCGTCTTACGGTCGAGGAAGGGAGTTGCCTGGTGGAAGGCATAAGAGCCTCATTTATGGCCACAATTTGACTGATGTTGTCATAACAGGTAATAATGGAACTATCGATGGTCAAGGGAGTATCTGGTGGAGCAGGTTTCAGAACAATACTCTGGATTATACACGTCCCCATTTGGTGGAATTGATGAATTCCATAGGAGTTCTCATTTCAAATTTAACATTCTTGAATTCTCCATTTTGGAATATTCATCCTGTATATTGCAGCCAAGTAAGAGTTCAGAATGTCACAATCCTTGCTCCTCATACTTCACCAAACACAGATGGGATTGATCCAGATTCTTCTGATGATGTATGCATTGAAGACTGTTATATAAGCACAGGTGATGATCTAATTGCCATCAAAAGTGGGTGGGACGAGTATGGAATTGCATATGGTCGTCCCAGCACAAACATTGTCATTCGCAGGCTCGTTGGAAAAACTCAAACAAGTGGAATTGCTATTGGAAGTGAGATGTCGGGCGGCGTATCAGAAGTTCACGCAGAAGATATTCACTTTTATGATTCATATAACGCAATCAGAATAAAGACTTCTCGTGGAAGGGGTGGTTATGTTAGAAACATCTACATCTCTAACATGACCTTGGTTAATATTGAATACGCTATTACGTTCAATGGTTTATATGGGGAACATCCAGATGATGCTTATGACCCAAATGCTCTACCAGTAATAGAAAAGATTACAATCAAGGATGTGATAGGAGAAAATATCAAACAAGCAGGTATTCTAGAGGGTATAGAAGGTGATAATTTTGTCAACATTTGCCTATCAAACATCTCCCTCAATGTGAGATCAAGCTTTCCATGGAACTGCTCTTATGTTAAAGGATACTCTGACATGGTTCACCCAGAAGCTTGTGAGCCTCTCATGGAGAGACTATTCCCTGAGCATTGTTCAGACTGTTACTATTTGTCAAATCACCAACAGAGTTCAAATAATCAAAGAGGTGACATGAGAAGTTGA 1386 0.4156 MRRPSILVGVLFLALFCCSPWTVWSSTLCKRKNLERVRPHSVSITEFGAVGDGITLNTKAFQNAIFYLNSFADKGGAKLFVPAGRWLTGSFDLISHLTLWLDKDAVILGSTNSDDWPVVDPLPSYGRGRELPGGRHKSLIYGHNLTDVVITGNNGTIDGQGSIWWSRFQNNTLDYTRPHLVELMNSIGVLISNLTFLNSPFWNIHPVYCSQVRVQNVTILAPHTSPNTDGIDPDSSDDVCIEDCYISTGDDLIAIKSGWDEYGIAYGRPSTNIVIRRLVGKTQTSGIAIGSEMSGGVSEVHAEDIHFYDSYNAIRIKTSRGRGGYVRNIYISNMTLVNIEYAITFNGLYGEHPDDAYDPNALPVIEKITIKDVIGENIKQAGILEGIEGDNFVNICLSNISLNVRSSFPWNCSYVKGYSDMVHPEACEPLMERLFPEHCSDCYYLSNHQQSSNNQRGDMRS* 462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g0477 461 SMART pbh1 270 291 IPR006626 -
Lja1g0477 461 SMART pbh1 297 318 IPR006626 -
Lja1g0477 461 SMART pbh1 326 347 IPR006626 -
Lja1g0477 461 SMART pbh1 209 235 IPR006626 -
Lja1g0477 461 SMART pbh1 236 268 IPR006626 -
Lja1g0477 461 Pfam Glycosyl hydrolases family 28 136 416 IPR000743 GO:0004650|GO:0005975
Lja1g0477 461 SUPERFAMILY Pectin lyase-like 35 430 IPR011050 -
Lja1g0477 461 Gene3D - 24 417 IPR012334 -
Lja1g0477 461 PANTHER PECTIN LYASE-RELATED 10 445 - -
Lja1g0477 461 PANTHER OS07G0245200 PROTEIN 10 445 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g0477 Lja-Chr1 4266263 4270235 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g0477 1 450 Glycoside Hydrolase AT3G62110 67.982 0.0 631
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g0477 - - gmx:100817309 832.402
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g0477 1 4266263 4270235 Lja5g1293 5 13022520 13026211 PCT