Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g1242 ATGAATTACTTCCGTCAAATCTCCGGCGGAGGAAGGCTGCTCCGGCGGTTGTGCACGGCGGCCACCGGGTATGAGCGTCCGGCAGAGAAGCCAAACCTCTATCGACAGTTATCCGCGCTGGAAAAGACCGGAGGTAGTGTCTCGCAGATTCTGAACCAGTATGTAATGCAAGGCAAAGCCATCAGAAAATCGGTGCTGGAGAATTGCATCAGGGAGCTACGCAAGTATCGCAAATTCCAACACGCACTAGAGATAATGGAATGGATGGAGATGAGGAAAGTGAATTTTTCATGGGATAATTATGCAGTGTATTTAGATCTTGTGTGCAAAACCAAAGGGGTGGTTGCAGCTGAGAGTTTCTTTGAGGGTCTTCTTCCTTGTGCCAAGAACAAGTACACATATGGTGCCCTTTTGAATTGTTATTGCAAGGAGCTAATGGCAGATAAGGCATTAGCTCTTTTCGACAAGATGGATGAGTTTCGCTTTGTCACTAGTTTGGCTTTCAACAATCTCATGAGCATGTATATGAGGCTCGGTCGACCCGAGAAGGTGCCGCAGCTGGTCCATGATATGAGGCAGAGGAGAATTCCCATCAGTGCGTTCACGTACCATGTCTGGATGAATAGCTGCGCGGCTTCGAATGATCTTAACGAGGCCGAAAGGATCTATGGGGAGATGAGAAGAGTAGATGGGAATATGATCGATTGGAGAACATATAGCAATCTTGCTGCTATATATGTAAAGGCTGAACAATTTGAGAAAGCGGAGGTGATGCTTAGAATGATGGAAGAGGAGATAAAGCCGCACGAGCGTGAGGCTTACCATTGCTTACTGAGCCTTTATGCGGGGACCCGTAATCGTGGAGAGGTTTATAGAGTGTGGGATCACCTGAAGTCATTTTCCCCGGTGATCAACACGAGCTATCTTGTTATGCTTTCTACCCTTAGAAGGCTTAATGATATCGAGGGTATAACAAAATGTCTTGAGGAGTGGGAATCTCAGTGTGTTACTTATGATATAAGGATGGTTAGTGTTGCAGTAAATGCTTACTTGAGACATGACATGGATGAAGAAGCTGAATCTGTTTTAAAGAGGGCTACGATGAGGTGCAAAGGACCTTTCTTTAAGATTCGAGAAATGTTCATGATGTTTTACTTGAAGAAAGATCAATTGGATGGTGCATTGAGCCACTTACAGGCGGCGCATTCAGAAGCTACCATATGGCGTCCTTCACCAGAAGTTGTAGGTGCTTTTCTAAAATATTATGATGAAAAAACGGATCTTGATGGTGTTGATGAGTTGTGCAAGATTCTCGATACTAATGATGATGATTCCTGTCTTAAAACTTGTGATGCTGCATCCGAGTCGTCTCCTGAAATTGATCCAATATTGAAGGAAGATTCTTATGTCAACCATGCACAAGGGAACTTGTGA 1434 0.4449 MNYFRQISGGGRLLRRLCTAATGYERPAEKPNLYRQLSALEKTGGSVSQILNQYVMQGKAIRKSVLENCIRELRKYRKFQHALEIMEWMEMRKVNFSWDNYAVYLDLVCKTKGVVAAESFFEGLLPCAKNKYTYGALLNCYCKELMADKALALFDKMDEFRFVTSLAFNNLMSMYMRLGRPEKVPQLVHDMRQRRIPISAFTYHVWMNSCAASNDLNEAERIYGEMRRVDGNMIDWRTYSNLAAIYVKAEQFEKAEVMLRMMEEEIKPHEREAYHCLLSLYAGTRNRGEVYRVWDHLKSFSPVINTSYLVMLSTLRRLNDIEGITKCLEEWESQCVTYDIRMVSVAVNAYLRHDMDEEAESVLKRATMRCKGPFFKIREMFMMFYLKKDQLDGALSHLQAAHSEATIWRPSPEVVGAFLKYYDEKTDLDGVDELCKILDTNDDDSCLKTCDAASESSPEIDPILKEDSYVNHAQGNL* 478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g1242 477 PANTHER OS01G0301500 PROTEIN 5 471 - -
Lja5g1242 477 Pfam PPR repeat family 166 211 IPR002885 -
Lja5g1242 477 Gene3D Tetratricopeptide repeat domain 166 457 IPR011990 GO:0005515
Lja5g1242 477 Gene3D Tetratricopeptide repeat domain 32 165 IPR011990 GO:0005515
Lja5g1242 477 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 199 233 IPR002885 -
Lja5g1242 477 PANTHER OS12G0527900 PROTEIN 5 471 - -
Lja5g1242 477 SUPERFAMILY TPR-like 199 402 IPR011990 GO:0005515
Lja5g1242 477 TIGRFAM PPR: pentatricopeptide repeat domain 167 198 IPR002885 -
Lja5g1242 477 TIGRFAM PPR: pentatricopeptide repeat domain 201 228 IPR002885 -
Lja5g1242 477 TIGRFAM PPR: pentatricopeptide repeat domain 132 163 IPR002885 -
Lja5g1242 477 Pfam PPR repeat 132 160 IPR002885 -
Lja5g1242 477 Pfam PPR repeat 238 264 IPR002885 -
Lja5g1242 477 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 130 164 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g1242 Lja-Chr5 12430005 12431913 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g1242 26 443 EF-hand Containing Proteins AT1G02150 33.412 2.03e-72 236
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g1242 - - gmx:100781679 660.988
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g1242 5 12430005 12431913 Lja5g1242 5 12430005 12431913 ECH
Lja5g1242 5 12430005 12431913 Lja1g0670 1 6284761 6286363 PCT