Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g1228 ATGGCTGTAGATGAATTGCCACTGGACGACAAAGCAAAGAGGATGAGAGATCTTCTCTCCAGTTTCTACTCTCCAGACCCATCCATGTCCTCCGACACCTCCTCCAAACTCGCCTCTCGAGACGACATCAACTCCCCTTCCTTCGATCCCGATCACTACATGAATCTCCAGGTGCACAAGTCCAATTTGGAAGGACTGCTTCAGCGGCATGTTGAAATGGCCGCTGAAATCAAGAATCTCGACACTGACTTGCAAATGCTGGTCTACGAGAATTACAACAAGTTCATCAGTGCTACAGATACCATCAAGAGGATGAAAAGTAACATTTCGGGGATGGAGTCGAATATGGAGCAGCTTCTTGACAAGATAATATCAGTGCAGTCAAGGAGTGACAATGTCAACACTTCACTATTTGACAAAAGGGAGCATATCGAGAAACTGCATCGAACTTGCAATCTTCTTCGGAAAGTTCAGTTCATATATGATCTACCTGATAGACTTGGCAAGTGCATCAAAGCAGAGGCGTATGCAGATGCAGTTCGGTTTTACACTGGTGCGATGCCAATTTTTAAGGCATATGGAGATTCATCATTTCAGGATTGTAAGCAAGCATCTGAAGAAGCAATGGCTACCATAGTAAAAAACTTGCAGGGAAAGCTATTTTCAGATTCTGAATCAATACAAGTGAGAGCTGAGGCTGCTGTACTCCTTAAGCAGTTAGATTTTCCGGTGAACAGTTTAAAGGCAAAGTTACTAGAAAAGTTAGAACAGTCTATTACTGACATTCAGCTGAACCCTAAAGAACTAAATAATGCTTCAGGGGACCTTTCTCCTTCAGCATCTGCTCATGAGGCAGCCATTCACGAATTTGTGGAGGCAGTTCGTGCTTTTCGAGTAATATTTCCTGATTCAGAAGAGCAATTGGTTAAACTTGCTCAGGACTTGGTTATGAAGAATTTTGTAATTACCGAGGAATATGTAAAGACACGGATTATCCCAGCAGATCTTCTTGGTGTTCTTCGAGTTATCTGGAATGATGTACTCTTGATAGATGAAGTCTTACCGGAAGCAGTTCTCTCTACCCATTCTCTTGAGGCTGCAAAGTTTGTTGTGACATTGTATGTTAGAAATGCATTTTCTCATCTTCTGCAAGATATCTCAGATTCCCTCTTACAAGTCCTGAAAAAGGATGGAGCAGAGCAGTACTCTCTTGAAACTGTTTTTGGATCTAGTACAAAAGCTGTTCTCCAAGGATGCTTGACAGTCTTGCAGGACTTCGGCAAAATTTTAGATGATGACTCTGGGATCCTAGTTAGACTAAGGGAGTTATTCATTGATTGGGTCCAAGAAGGATTTCAAGACTTTTTTAGGCAACTTGAAGACCAGTTCCTTCTATTTTCAGGAAGAACTAGTTCTCCTGCTATTCAAGTACATGGTTTGGCAGAGGGAGCTCAAGGGGACAAAGCATTTGCTAGCCTTGTCCTAGTGCTGGCACAATTGTCTGCTTTTATTGAACAAACTGTTATCCCAAAAATCACTGAGGAAATAGCTGCTTCATTTTCTCGCGGCAGTCTTAGAGGCTATGAATCTGGACCTGCCTTTGTTCCAGGAGAAATATGTCGAAAATTTCGGTCAGGCCGTGAAAAATTTCTGCACCTGTACATAAATATGAGAACTCAGAGGATATCACTTCTCCTGAAGAAAAGGTTTACCACACCTAATTGGATTAAGCATAAGGAGCCAAGAGAAGTTCATATGTTTGTCGATTTATTTCTTCAAGAGCTTGAAGTTATAGGTAACGAAGTGAAGCAGATTTTGCCTCAGAGTGCGCGCAAGCACCGCAGGACAGATAGTAATGGAAGCAGTGTTTCATCGAGGAGCAACCCCTTACGAGAGGAGAAATTGGGTAGGTCGAACACTCAAAAAGCAAGGAGCCAGCTTTTGGAAACACACCTAGCGAAGCTGTTTAAGCAAAAAGTTGAAATTTTCACGAAAGTAGAATATACACAGGAGTCTGTTGTTACAGCTATAGTTAAATTTTGCCTTAAAAGTTTACAAGAATTTGTCAGACTACATACTTATAACCGGAGTGGATTCCAGCAAATTCAATTAGATATTCAGTTCCTAAGGATTCCTATAAGGGAGATAGTTGAAGATGAAGCTGCAATCGACTTCTTGCTTGATGAGATAATTATTGGTACTGCAGAGCGGTGTCTTGATCCAATTCCATTGGAGCCTCCCATACTGGACAAACTTATACAAGCTAAGTTGGCTAAAACCAAGGAACAAAATACAATCTCTTCATAA 2307 0.4144 MAVDELPLDDKAKRMRDLLSSFYSPDPSMSSDTSSKLASRDDINSPSFDPDHYMNLQVHKSNLEGLLQRHVEMAAEIKNLDTDLQMLVYENYNKFISATDTIKRMKSNISGMESNMEQLLDKIISVQSRSDNVNTSLFDKREHIEKLHRTCNLLRKVQFIYDLPDRLGKCIKAEAYADAVRFYTGAMPIFKAYGDSSFQDCKQASEEAMATIVKNLQGKLFSDSESIQVRAEAAVLLKQLDFPVNSLKAKLLEKLEQSITDIQLNPKELNNASGDLSPSASAHEAAIHEFVEAVRAFRVIFPDSEEQLVKLAQDLVMKNFVITEEYVKTRIIPADLLGVLRVIWNDVLLIDEVLPEAVLSTHSLEAAKFVVTLYVRNAFSHLLQDISDSLLQVLKKDGAEQYSLETVFGSSTKAVLQGCLTVLQDFGKILDDDSGILVRLRELFIDWVQEGFQDFFRQLEDQFLLFSGRTSSPAIQVHGLAEGAQGDKAFASLVLVLAQLSAFIEQTVIPKITEEIAASFSRGSLRGYESGPAFVPGEICRKFRSGREKFLHLYINMRTQRISLLLKKRFTTPNWIKHKEPREVHMFVDLFLQELEVIGNEVKQILPQSARKHRRTDSNGSSVSSRSNPLREEKLGRSNTQKARSQLLETHLAKLFKQKVEIFTKVEYTQESVVTAIVKFCLKSLQEFVRLHTYNRSGFQQIQLDIQFLRIPIREIVEDEAAIDFLLDEIIIGTAERCLDPIPLEPPILDKLIQAKLAKTKEQNTISS* 769
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g1228 768 PANTHER LOW QUALITY PROTEIN: VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 51 HOMOLOG 1 729 - -
Lja5g1228 768 SUPERFAMILY ARM repeat 105 462 IPR016024 -
Lja5g1228 768 MobiDBLite consensus disorder prediction 23 42 - -
Lja5g1228 768 Coils Coil 102 122 - -
Lja5g1228 768 PANTHER UNCHARACTERIZED 1 729 IPR014812 -
Lja5g1228 768 Pfam Vps51/Vps67 43 127 - -
Lja5g1228 768 MobiDBLite consensus disorder prediction 608 641 - -
Lja5g1228 768 MobiDBLite consensus disorder prediction 21 49 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g1228 Lja-Chr5 12354309 12363794 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g1228 K20296 - gmx:100779149 1227.23
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g1228 5 12354309 12363794 Lja5g1228 5 12354309 12363794 ECH
Lja1g0421 1 3711740 3720879 Lja5g1228 5 12354309 12363794 PCT