Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g0421 ATGTCGTGTATGATAGATGTCGCATCAGACAGATTAAAAATATTGTTATCTAGAATGCTAAAGATATTACCATGTCCCCACACGATCGATAATATCTTCGATTTAGGATTGCTGGCACAAAAATCGAATCTGGAAGGGCTACTCCAGAGGCACGTTGAAATGGTAACCGAAATCAAGAATCTCGACACCGATTTGCAAACGCTCGTTTATGAGAATTACAACAAGTTCATCTGCGCTACCGATTCAATCAAGAGGATGAAAAGCAATATTTTGGGGATGGAGGCCAGTATGGAACACCTTCTTGAGAAGATAATGTCTGTTCAGTCAAGGAGTGATGGTGTTAACACTTCTTTATCAGAAAATAGGGAGCATATAGAGAAATTGCACCTGACTTGCAATCTTCTTCGTAAAATTCAGTTCATATATGACCTTCCTGATAGACTGGCCAAGTGCATCAAAGTTGAGGCCTATGCAAATGCAGTCAGGTTCTATACCGGTGCAATGCCAATTTTTAAGGCATATGGAGACTCATCATTCAAAGATTGTAAGCAAGCATCTGAAGAAGCAATAGCTATCATAGTAAAAAATTTGCAGGAAAAGGTATTTTCAGATTCTGAATCAACGCAAGTGAGAGCTGAGGCTGCTGTGCTCCTTAAGCAGTTGAATTTTCCGGTGGACAATTTGAAGGCAAAGCTACGAGAGAATTTGGAGCATTTCCTTTCAGACACTCAGCTGATCCCTGAAGTAGAAGAGACTGTTTCACCCTCTTCTCATGAGGTAGCTATTTGTGAGTTTGTGGAGGCAATTCGTGCATTCCAAGTAATATTTCCTGATTCAGAAAAGCAATTAGTTAACCTTGCTCAAGAGTTAATTACCAAGCGCTTCCTAATTATTGAGGAGTATGTAAAGACACGAATCTGTGGAGAAGATTTACTTGGTGTTCTTCGAGTTATCTGGAATGATGTGCTCCTAATGGATGAAGTCTTACAAGAAGCATCTCTCTACAATCATTCTCTTGAGGCTTCCAAGGTTGCTGTCAAGACGTATATTGGAAGTGTATTTTCTCATTTGATGCAAGATATCTCAGATACCCTCTTAAAAGTACTGAAACGGGATGGAGCAGAGGAGCATTCCCTAGAAGTTGTTCTAGATGCTAGCATAAAAGCAGTTCTCGAAGGAGGCAGAGACTTTTTGCTGGATGTCCGCAGAATTCTAGATGACAATTTAGAGATCCTAAATGAACTAAGAGAGTTAATCTTTGATTGGGTTCAAGAAGGATTTCAAGACTTTTTTAGACAACTTGAAGTTCAGTTCCTATTGTTTTCAGGGAGAAAAACTTCTTTAGCTACCCAAAATCGTGAATTGGCAGAGGGCGTCCATGGTGACAAAGCTTTTCCAAGCCTTGTCCTAGTGTTGGCACGACTGTCTGTTATTATTGAACAAACTGCCATCCCAAAAATCACCAAGGAATTAGCAGCTTCCTTTTCTGGTGGGAATTTTCAAGGTTATGAATATGAACCTGGCTTTGTTCCTGAAGAGATCTCCCAAAAATTTAGGTCTGCCGGTGAAAAATTCTTGCATATGTACATAAATATGAAAACTCAGCGAATATCACTTCTCCTGAAGAAGAGGTTTACCACACCTTGTTGGGTAAAGCATAAGGAGCCAAGAGAAGTTCACATGTTTGTTGATTTGTTTCTTCAAGAGCTTGAAGTTATAGGTAATGAAGTGAAGGAGATTTTACCTCAAGGTATACGGAAGCACCACAGGGTTGATAGTACCGGAAGTAATGCTTCTTCAACAAGAAGCAACTCCTTTCGCGAAGAGAAGTTGACTCGATCAAATACTCTCAAGGGAAGGAGCCAGCAGCTTTTGGAAACACACCTAGCCAAACTGTTCAAGCAAAAAGTTGAAATTTTCACAAAAGTGGAGTATACACAGGAATCAGTCATTATGACCATTGTTAAATTGTGCCTTAAAAGTTTACAAGAATTTGTTCGATTCCAGACTTTTAATAGGAGTGGATTTCAGCAAATTCAGTTAGATATTCAGTTCTTAAGGACCCCTATAAAAGAAATAGTTGAAGATGAAGCTGCAATGGATTTCTTGCTTGATGAGGTGATTGTTGCTGCTACAGAGCGATGCCTTGATCCAATTTCATTGGAGCCGCCCATATTAGAAAGACTTATAGGAGCAAAGCTGGCAAAAACCAAGGAACAAGATACAATCTCTTCATAA 2238 0.3954 MSCMIDVASDRLKILLSRMLKILPCPHTIDNIFDLGLLAQKSNLEGLLQRHVEMVTEIKNLDTDLQTLVYENYNKFICATDSIKRMKSNILGMEASMEHLLEKIMSVQSRSDGVNTSLSENREHIEKLHLTCNLLRKIQFIYDLPDRLAKCIKVEAYANAVRFYTGAMPIFKAYGDSSFKDCKQASEEAIAIIVKNLQEKVFSDSESTQVRAEAAVLLKQLNFPVDNLKAKLRENLEHFLSDTQLIPEVEETVSPSSHEVAICEFVEAIRAFQVIFPDSEKQLVNLAQELITKRFLIIEEYVKTRICGEDLLGVLRVIWNDVLLMDEVLQEASLYNHSLEASKVAVKTYIGSVFSHLMQDISDTLLKVLKRDGAEEHSLEVVLDASIKAVLEGGRDFLLDVRRILDDNLEILNELRELIFDWVQEGFQDFFRQLEVQFLLFSGRKTSLATQNRELAEGVHGDKAFPSLVLVLARLSVIIEQTAIPKITKELAASFSGGNFQGYEYEPGFVPEEISQKFRSAGEKFLHMYINMKTQRISLLLKKRFTTPCWVKHKEPREVHMFVDLFLQELEVIGNEVKEILPQGIRKHHRVDSTGSNASSTRSNSFREEKLTRSNTLKGRSQQLLETHLAKLFKQKVEIFTKVEYTQESVIMTIVKLCLKSLQEFVRFQTFNRSGFQQIQLDIQFLRTPIKEIVEDEAAMDFLLDEVIVAATERCLDPISLEPPILERLIGAKLAKTKEQDTISS* 746
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g0421 745 Coils Coil 83 103 - -
Lja1g0421 745 MobiDBLite consensus disorder prediction 588 612 - -
Lja1g0421 745 PANTHER LOW QUALITY PROTEIN: VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 51 HOMOLOG 36 706 - -
Lja1g0421 745 Pfam Vps51/Vps67 39 109 - -
Lja1g0421 745 PANTHER UNCHARACTERIZED 36 706 IPR014812 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g0421 Lja-Chr1 3711740 3720879 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g0421 K20296 - gmx:100779149 1028.47
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g0421 1 3711740 3720879 Lja1g0421 1 3711740 3720879 ECH
Lja1g0421 1 3711740 3720879 Lja5g1228 5 12354309 12363794 PCT