Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g1222 ATGGATTCCATGTCCTTACCCCTCATCGCCATTCTCTTTCTCCTCCTCATTTCCGGCAGCCAGGCACGTGAGCCTTTCGCCTGTGATCCGAAGAACACAACCACGACGAACTTGCCATTTTGCCGGGCATCGCTGGTAACAGGAGCCAGGGTTAATGACATAATTGGAAGGTTGACACTACAAGAGAAGGTTAACTTGCTGGTGAACAATGCCGCGGCGGTTCCTAGGCTTGGAATCAAAGGCTATGAGTGGTGGTCGGAGGCACTACACGGTGTTTCAAATGTGGGTCCAGGAACCAAGTTTGGTGGCCAATTCCCTGCTGCAACTAGCTTCCCTCAAGTCATCACCACTGCTGCTTCATTCAATGCTTCATTGTGGGAAGCAATCGGACAGGTTGTTTCGGATGAAGCAAGAGCAATGTACAATGGAGGTATGGGTGGGCTCACATATTGGAGCCCAAACGTCAACATATTCAGGGATCCACGATGGGGTCGTGGACAGGAGACTCCCGGTGAGGACCCAATTCTAGCCGGGAAGTATGCAGCTAGTTATGTAAGAGGACTACAGGGAACAGACCGTAGTCGGTTGAAGGTGGCTGCTTCTTGCAAGCACTTCACAGCTTATGATCTTGATAATTGGAACGGTGTGGATCGCTTTCACTTCAATGCAAAGGTGAGCAAGCAGGACATAGAAGACACGTTCAATGTGCCATTCAGGATGTGTGTGAAGGAAGGTAATGTGGCGAGTGTGATGTGTTCTTATAATCAAGTTAATGGTGTCCCTACCTGTGCAGACGCCAACCTCCTCAAGAGAACTGTTCGTGGCCAATGGGGTCTTAATGGGTACATTGTATCAGACTGTGACTCTGTTGGGGTGTTCTACACTAGCCAACATTACACATCAACACCAGAAGAAGCTGCTGCTGATGCCATTAAAGCAGGCTTGGATTTGGATTGTGGGCCTTTCTTAGGGGCCCATACACAGAATGCTGTCAAGAGAGGCCTGTTAAGTGAAGCTGATGTGAATGTTGCATTAGCAAACACATTGACAGTTCAAATGAGGCTAGGGATGTTTGATGGCGAGCCATCAAGTCAAGCATATGGCAACCTTGGTCCAAGAGATGTGTGCACCCAACCTCACCAAGAGCTAGCCCTTGAAGCTGCTAGACAAGGGATTGTGCTCCTAAAGAACAGTGGTCCCTCTTTGCCTCTCTCCACTCGACGCCATCGCACCCTGGCTATCATTGGGCCCAATTCTAATGCCACTGTCACAATGATAGGAAACTATGCTGGTATTGGTTGTAGATACACAAGCCCTTTAGAAGGAATAGGAAAGTACGCAAAGACTATCCACGAGCTCGGGTGTGCAAATGTGGCTTGCACTGATGACAAGCAATTCGGGTCAGCTCTGAATGCAGCTCGTCAAGCAGATGCGACGGTTCTAGTGATGGGCCTGGACCAGTCCATTGAGGCTGAAACCGTGGACCGGGCTGGCTTGCTTCTTCCCGGGCGTCAACAAGACCTTGTGTCAAAGGTAGCAGCTGCCTCTAAGGGCCCAACCATTTTGGTCTTAATGTCTGGTGGGCCTGTGGATATAACTTTTGCAAAGAATGACCCACGAATTGTGGGCATCTTGTGGGCTGGATATCCTGGTCAAGCTGGTGGTGCTGCCATTGCAGATGTCTTATTTGGAACAACTAATCCTGGGGCAAGGCTACCAATGACATGGTACCCACAAGGCTACATTCAAAACTTGCCAATGACAAACATGGCAATGAGACCAAGCCGACCCACAGGGTACCCAGGAAGAACCTATCGATTCTACAAAGGTCCTGTGGTGTATCCATTTGGTTATGGATTGTCCTACACCCACTTTGTTCACACACTAGCTAGTGCACCCAAAGTGGTGTCTGTGCCTGTAGATGGCCATCGCCATGGAAATGTCTCAAACATTTCAAACAAGGCAATTAGAGTGACACATGCACGGTGTGGCAAGCTTTCTGTTAGCCTTCAAGTTGATGTTAAAAATGCTGGGTCCATAGATGGCACTCACACTTTGTTAGTGTTCACAACACCACCTAGAGGTAATGGTCATTGGGCACCGCGCAAGCAACTAGTGGCGTTTGAGAAAGTTCATATTCCTGCTAAGGCTCAGCGGAGAGTGCGAGTTAACATTCATGTTTGCAAGCTTCTGAGTGTGGTTGATAGGTCTGGTATAAGGAGAATCCCAATGGGGGAACACAGGTTTCAAATTGGTGATATTGAACATTCTCTGTCACTTCAAGCAAAAACACTTGGAGTCATCAAATCCTGA 2313 0.4855 MDSMSLPLIAILFLLLISGSQAREPFACDPKNTTTTNLPFCRASLVTGARVNDIIGRLTLQEKVNLLVNNAAAVPRLGIKGYEWWSEALHGVSNVGPGTKFGGQFPAATSFPQVITTAASFNASLWEAIGQVVSDEARAMYNGGMGGLTYWSPNVNIFRDPRWGRGQETPGEDPILAGKYAASYVRGLQGTDRSRLKVAASCKHFTAYDLDNWNGVDRFHFNAKVSKQDIEDTFNVPFRMCVKEGNVASVMCSYNQVNGVPTCADANLLKRTVRGQWGLNGYIVSDCDSVGVFYTSQHYTSTPEEAAADAIKAGLDLDCGPFLGAHTQNAVKRGLLSEADVNVALANTLTVQMRLGMFDGEPSSQAYGNLGPRDVCTQPHQELALEAARQGIVLLKNSGPSLPLSTRRHRTLAIIGPNSNATVTMIGNYAGIGCRYTSPLEGIGKYAKTIHELGCANVACTDDKQFGSALNAARQADATVLVMGLDQSIEAETVDRAGLLLPGRQQDLVSKVAAASKGPTILVLMSGGPVDITFAKNDPRIVGILWAGYPGQAGGAAIADVLFGTTNPGARLPMTWYPQGYIQNLPMTNMAMRPSRPTGYPGRTYRFYKGPVVYPFGYGLSYTHFVHTLASAPKVVSVPVDGHRHGNVSNISNKAIRVTHARCGKLSVSLQVDVKNAGSIDGTHTLLVFTTPPRGNGHWAPRKQLVAFEKVHIPAKAQRRVRVNIHVCKLLSVVDRSGIRRIPMGEHRFQIGDIEHSLSLQAKTLGVIKS* 771
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g1222 770 Pfam Glycosyl hydrolase family 3 N terminal domain 104 347 IPR001764 GO:0004553|GO:0005975
Lja5g1222 770 PANTHER ALPHA-L-ARABINOFURANOSIDASE/BETA-D-XYLOSIDASE 7 766 - -
Lja5g1222 770 SMART Fn3_like_2 684 755 IPR026891 -
Lja5g1222 770 Gene3D Immunoglobulins 647 768 IPR013783 -
Lja5g1222 770 Pfam Fibronectin type III-like domain 685 753 IPR026891 -
Lja5g1222 770 SUPERFAMILY (Trans)glycosidases 38 391 IPR017853 -
Lja5g1222 770 Gene3D - 50 367 IPR036962 GO:0004553|GO:0005975
Lja5g1222 770 PRINTS Glycosyl hydrolase family 3 signature 272 290 IPR001764 GO:0004553|GO:0005975
Lja5g1222 770 PRINTS Glycosyl hydrolase family 3 signature 111 130 IPR001764 GO:0004553|GO:0005975
Lja5g1222 770 PRINTS Glycosyl hydrolase family 3 signature 198 214 IPR001764 GO:0004553|GO:0005975
Lja5g1222 770 PANTHER SUGAR HYDROLASE-RELATED 7 766 IPR044993 GO:0009044|GO:0045493
Lja5g1222 770 SUPERFAMILY Beta-D-glucan exohydrolase, C-terminal domain 392 625 IPR036881 GO:0004553|GO:0005975
Lja5g1222 770 Pfam Glycosyl hydrolase family 3 C-terminal domain 392 622 IPR002772 GO:0004553|GO:0005975
Lja5g1222 770 Gene3D - 378 623 IPR036881 GO:0004553|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g1222 Lja-Chr5 12237228 12240912 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g1222 6 770 Glycoside Hydrolase AT1G02640 72.952 0.0 1177
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g1222 - - gmx:100798630 1382.08
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g1222 5 12237228 12240912 Lja5g1222 5 12237228 12240912 ECH
Lja1g0415 1 3651735 3663464 Lja5g1222 5 12237228 12240912 PCT