Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g0415 ATGGCCTCCACTTCCTCACCACCCTTCATTACTATCATTACTATCTTCTTCTTCCTCCTCCTACTATTAGGAGTTTTCCGGCACACCGGAGAAGCCCGTGACCCGTTCGCTTGTGACCCGAAAGATGGCACCACAAAGAGCTTGCCATTTTGCAAGGTGTCACTGCCGATACAGGAGAGGGTGAAGGACCTCATTGGAAGGTTGACGCTGCAAGAAAAGGTTAACCTACTCGTGAACACCGCCGGTGCGGTTCCCCGGCTCGGGATCAAAGGCTATGAGTGGTGGTCGGAGGCGCTTCATGGAGTCTCAAATGTGGGCCCCGGAACCAAGTTTGGTGGTCAGTTCCCTGGTGCTACTAGCTTCCCACAAGTCATCACCACCGCTGCTTCCTTCAATGATTCTTTGTGGGAGGCCATTGGACGGGTTGTCTCGGACGAAGCAAGGGCAATGTACAATGGAGGAGCAGCAGGGCTAACGTATTGGAGCCCAAACGTGAACATTTTCAGAGACCCTAGATGGGGCCGTGGACAGGAAACTCCTGGTGAGGACCCTGTGCTAGCTGGTAGATACGCTGCTAGTTACGTGAGGGGGCTACAGGGAACTGATGGTGACCGGTTGAAGGTGGCTGCTTGCTGCAAACACTTTACAGCTTATGATCTTGATAATTGGAACGGTGTGGATCGCTTCCACTTTAATGCACAGGTGAGTAAGCAGGACAAAGAGGAAACATTTGATGTTCCATTCAGGATGTGTGTGAAAGAAGGCAAAGTAGCAAGTGTGATGTGTTCTTACAATCAAGTCAATGGGGTCCCAACCTGTGCAGACCCCAACCTCCTAAAGAGAACAGTTCGTGGACAATGGCATCTTGATGGGTACATTGTTTCAGACTGTGACTCAGTGGGAGTGTTTTATAGTAACCAACATTACACATCAACACCAGAAGAAGCTGCTGCTGATGCCATTAAAGCAGGTTTAGATTTAGATTGTGGTCCTTTCCTAGGATTGCACACGCAGGACGCGGTGAAAAAAGGTTTGTTAAGCGAAGCAGATGTGAGTGGTGCTTTGATGAACACACTCACAGTGCAGATGAGGTTAGGTATGTTTGATGGAGAGCCATCAGCTCAGAATTATGGCCACTTAGGTCCAAGAGACGTGTGTAAACCGGCTCATCAAGAACTTGCCCTTGAAGCTGCAAGACAAGGGATTGTGCTCCTTAAGAACAATGGTCCCTCTTTGCCTCTCTCCCCGCAGCGTCACCGCACCGTGGCTGTCATAGGCCCCAATTCCGATGCCACAGTCATGATGATTGGAAACTATGCAGGTATTGCTTGTGGATATACCAGCCCTTTACAAGGAATAGGAAGATATGCCAAGACTATTCATCAAAAGGGCTGTGATCATGCAACTTGTGCTGATGACAAGCAATTTGGGCCAGCTCTAGATGCAGCTCGTCATGCAGATGCAACTGTTCTTGTGATGGGGTTGGACCAGTCTATTGAAGCTGAAACAAGGGATAGGGTTGGGTTGCTTTTGCCAGGGCATCAACAAGACCTTGTTTCAAAGGTAGCAGCTGCCTCAAGGGGACCAACTATTTTGGTCTTGATGTCTGGTGGACCTTTAGACATTACTTTTGCAAAGAATGACCCTAGAATTGCAGGCATCTTGTGGGCTGGCTATCCCGGCCAAGCCGGTGGTGCTGCCATTGCAGATATCCTGTTTGGAACCGCTAACCCAGGAGGTAAGCTACCTGTGACATGGTACCCACAAGAGTACCTAAAAAACCTGCCAATGACAAATATGGCAATGAGACCAAGCAGAACAGCAGGGTACCCAGGAAGAACATATAGATTCTACAATGGCCCAGTGGTGTTTCCATTTGGACATGGACTGACTTACACTCACATTGTCCACACCTTAGCTAGCGCGCTCACGGTGGTGTCAGTTCCGGTGGACGGTCACCGCCATGCCAACAGCACCAACATTTCAAACAAGGCAATTAGAGTGACACACGCGCGGTGTGGCAAGCTCTCCATCGCACTCCACGTCAACGTTAAGAATGTGGGATCTAGAGACGGCACTCACACATTGCTAGTGTTCTCTGCTCCACCCGATGGTGGTGCTCATTGGGCAGTGCAGAAGCAGCTTGTGGCGTTTGAGAAGGTTCATGTCCCTGCAAAGTCACAGCAGCGAGTCCAAATCAACATTCATGTTTGCAAGCTCCTCAGTGTAGTGGACAGGTCAGGGATAAGGAGAATACCGATGGGGGAACACAGTCTTCATATTGGTGATGTTAAACATTCTGTTTCACTTCAAGCTGATGCAATTGGAATTATCAAGTCCTGA 2343 0.4934 MASTSSPPFITIITIFFFLLLLLGVFRHTGEARDPFACDPKDGTTKSLPFCKVSLPIQERVKDLIGRLTLQEKVNLLVNTAGAVPRLGIKGYEWWSEALHGVSNVGPGTKFGGQFPGATSFPQVITTAASFNDSLWEAIGRVVSDEARAMYNGGAAGLTYWSPNVNIFRDPRWGRGQETPGEDPVLAGRYAASYVRGLQGTDGDRLKVAACCKHFTAYDLDNWNGVDRFHFNAQVSKQDKEETFDVPFRMCVKEGKVASVMCSYNQVNGVPTCADPNLLKRTVRGQWHLDGYIVSDCDSVGVFYSNQHYTSTPEEAAADAIKAGLDLDCGPFLGLHTQDAVKKGLLSEADVSGALMNTLTVQMRLGMFDGEPSAQNYGHLGPRDVCKPAHQELALEAARQGIVLLKNNGPSLPLSPQRHRTVAVIGPNSDATVMMIGNYAGIACGYTSPLQGIGRYAKTIHQKGCDHATCADDKQFGPALDAARHADATVLVMGLDQSIEAETRDRVGLLLPGHQQDLVSKVAAASRGPTILVLMSGGPLDITFAKNDPRIAGILWAGYPGQAGGAAIADILFGTANPGGKLPVTWYPQEYLKNLPMTNMAMRPSRTAGYPGRTYRFYNGPVVFPFGHGLTYTHIVHTLASALTVVSVPVDGHRHANSTNISNKAIRVTHARCGKLSIALHVNVKNVGSRDGTHTLLVFSAPPDGGAHWAVQKQLVAFEKVHVPAKSQQRVQINIHVCKLLSVVDRSGIRRIPMGEHSLHIGDVKHSVSLQADAIGIIKS* 781
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g0415 780 Pfam Glycosyl hydrolase family 3 N terminal domain 115 354 IPR001764 GO:0004553|GO:0005975
Lja1g0415 780 SUPERFAMILY Beta-D-glucan exohydrolase, C-terminal domain 402 634 IPR036881 GO:0004553|GO:0005975
Lja1g0415 780 Gene3D - 60 377 IPR036962 GO:0004553|GO:0005975
Lja1g0415 780 SUPERFAMILY (Trans)glycosidases 48 401 IPR017853 -
Lja1g0415 780 Gene3D Immunoglobulins 656 776 IPR013783 -
Lja1g0415 780 Pfam Glycosyl hydrolase family 3 C-terminal domain 402 632 IPR002772 GO:0004553|GO:0005975
Lja1g0415 780 Pfam Fibronectin type III-like domain 695 763 IPR026891 -
Lja1g0415 780 PANTHER ALPHA-L-ARABINOFURANOSIDASE/BETA-D-XYLOSIDASE 11 776 - -
Lja1g0415 780 PANTHER SUGAR HYDROLASE-RELATED 11 776 IPR044993 GO:0009044|GO:0045493
Lja1g0415 780 Gene3D - 388 633 IPR036881 GO:0004553|GO:0005975
Lja1g0415 780 PRINTS Glycosyl hydrolase family 3 signature 121 140 IPR001764 GO:0004553|GO:0005975
Lja1g0415 780 PRINTS Glycosyl hydrolase family 3 signature 282 300 IPR001764 GO:0004553|GO:0005975
Lja1g0415 780 PRINTS Glycosyl hydrolase family 3 signature 208 224 IPR001764 GO:0004553|GO:0005975
Lja1g0415 780 SMART Fn3_like_2 694 765 IPR026891 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g0415 Lja-Chr1 3651735 3663464 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g0415 12 780 Glycoside Hydrolase AT1G02640 74.252 0.0 1191
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g0415 - - gmx:100789316 1350.88
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g0415 1 3651735 3663464 Lja1g0415 1 3651735 3663464 ECH
Lja1g0415 1 3651735 3663464 Lja5g1222 5 12237228 12240912 PCT