Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g1221 ATGGCTGTCACCACCCCCTATTTCAATCCTACAGAGAAAAAACACTGGTGGCTCACCAATCGTAAGCTTGTTGAGAAATATATCAGAGAGGCACGCAGCCTCATCGCGACGCAGGAACATAGCGAGATCACTTCAGCTGTGAGCCTTCTAGACGCGGCTTTGGCGATCTCTCCGCGGCTAGACCAAGCGCTTGAGCTCAGAGCGAGGTCTCTGCTCTTCCTGCGGCGGTTCAAGGATGTCGCCGACATGCTTCAAGACTATATTCCCAGCCTCAAGATGGCGATGGCAGCGAGTGATGACTCAGGCTCTGTTTCTTCTGAAGGTTCTTCGTCTCAGCAGCTTTCTAGAGAAGGTGTGAAGCTTCTTTCTTCATCAACATCGGATTCCTCTGTTCAGGAACAGAGTTTCAAGTGCTTCTCTGTTTCTGATTTGAAGAAAAGAGTCATGGCTGGGCTCTGTAAAAGTTTTGATAAAGAAGGGTATTGGAGATACTTGGTTTTGGGCAAAGCATGCTGCCACTTAGGCCTAATGGAGGATGCAATGGTTCTACTACAAACCGGAAAACGCCTAGCAAGTGCGGCGTTCCGCCGCGAGAGCGTGTGCTGGTCGGACGACAGCTTCTCACTCTGGACCACCACACCGTTCTCCGGCGACTCCACCACCGCAGCCACCACCCCACCCCGCGCCCCTCTAACAGAGTCCGAATCCGTCACACAACTCCTAGCCCACATCAAGTTCCTCCTCCGCCGCCGCGCCGCCGCAATGGCCGCCCTCGACGCAGGCCTCCACTCGGAGGCCATCCGACACTTCTCAAAAATCCTCGACGGCCGCCGCGGCGCTCCACAAGGCTTCCTCGCCGAGTGCTACCTTCACAGAGCCACCGCATTCCGCTCTGCAGGCCGAATCGCCGACTCAATCGCCGATTGCAACCGAACCTTAGCACTGGACCCAGCCTGCATCCAAGCACTCGAAGCCAGAGCTTCCCTTCTCGAATCAATTCGCTGCTACCCAGATTGCTTGCACGACCTCGAGCATCTCAAGCTTCTCTACAACTCCATCTTACGTGACAGAAAACTCGCCGGCCCTATCTGGAAGCGGCACAACATCCGCTACGGCGAGATTCCGGGGAAGCTCTGCACCCTCGCCGTGAAATCTCAACAACTAAAGCAGAGAGTCGCTGCTGGAGAAACCAGAAACGTTGACTACCACGCTCTGATCGGGTTACGACGCGGGTGTGGGAAATCAGAGTTGCAGAGAGCTCATCTGTTACTCTGTTTGAAGCACAAGCCGGACAAATCCACCGGGTTCATCGAACGGTGCGAGCTAGCCGATGAACGTGACCTTGAATCGGTTAGAGACAGGGCGAGGATGTCAGCGTTGTTGCTGTATAGATTGATTCAGAAGGGTTATAGCAGTGTGAATGGTGTGATTGTGGAGGAAGAGAATGCTGAGAAACAGAGGAAGATGAATGTGGTGCAAAAAACAGCAAATGCTGTGGTTCAAGTGCAACATAAGATTCAGATGAAAACAGATGAAGTGAAGATTGATGATTATAATGGTAATAAGCCTGATAAGTTGGTATATGAGTCAAGGAAATGTGCTGCTTCTTCACCTTCGATTGTGAATCCCTCTGCTTTTCAAGGTGTGTTTTGCCGTGATATTGCGGTGGTTGGGAATCTGCTTTCGCAGGGGAGGTTCAATAGGTCGATTCCGGTGAAGTATGAGGCATTGACTTGCTGA 1740 0.5224 MAVTTPYFNPTEKKHWWLTNRKLVEKYIREARSLIATQEHSEITSAVSLLDAALAISPRLDQALELRARSLLFLRRFKDVADMLQDYIPSLKMAMAASDDSGSVSSEGSSSQQLSREGVKLLSSSTSDSSVQEQSFKCFSVSDLKKRVMAGLCKSFDKEGYWRYLVLGKACCHLGLMEDAMVLLQTGKRLASAAFRRESVCWSDDSFSLWTTTPFSGDSTTAATTPPRAPLTESESVTQLLAHIKFLLRRRAAAMAALDAGLHSEAIRHFSKILDGRRGAPQGFLAECYLHRATAFRSAGRIADSIADCNRTLALDPACIQALEARASLLESIRCYPDCLHDLEHLKLLYNSILRDRKLAGPIWKRHNIRYGEIPGKLCTLAVKSQQLKQRVAAGETRNVDYHALIGLRRGCGKSELQRAHLLLCLKHKPDKSTGFIERCELADERDLESVRDRARMSALLLYRLIQKGYSSVNGVIVEEENAEKQRKMNVVQKTANAVVQVQHKIQMKTDEVKIDDYNGNKPDKLVYESRKCAASSPSIVNPSAFQGVFCRDIAVVGNLLSQGRFNRSIPVKYEALTC* 580
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g1221 579 SMART tpr_5 286 319 IPR019734 GO:0005515
Lja5g1221 579 SMART tpr_5 161 194 IPR019734 GO:0005515
Lja5g1221 579 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN 3 579 - -
Lja5g1221 579 PANTHER - 3 579 - -
Lja5g1221 579 Gene3D Tetratricopeptide repeat domain 219 360 IPR011990 GO:0005515
Lja5g1221 579 SUPERFAMILY TPR-like 252 349 IPR011990 GO:0005515
Lja5g1221 579 CDD DnaJ 401 435 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g1221 Lja-Chr5 12203728 12206733 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g1221 - - gmx:106797171 789.26
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g1221 5 12203728 12206733 Lja5g1221 5 12203728 12206733 ECH
Lja1g0414 1 3631881 3634965 Lja5g1221 5 12203728 12206733 PCT