Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g0414 ATGGCAGTCACTGCTCACTCTCTATCTGCTACAGAGAAGAAGCACTGGTGGCTCACAAACAGAAAGATTGTTGAGAAATACATCAAAGATGCTAGGAGTTTGATTGCAACACAAGAACAGAGCGAGATCGCTTCAGCTCTGAACCTTCTTGACGCAGCTTTGGCGATCTCTCCGCGGTTGGACCAGGCTCTTGAGCTGAGAGCGAGGTCGCTGTTGTATCTGCGGCGGTTCAAGGAGGTTGCTGACATGCTTCAGGACTACATTCCTAGCCTGAGAATGGCGAATGAGGATCCTGTTTCAGTCTCCTCCTCTTCTGATTGCTCTTCCCAGAATCTTTCCAGGGAGGGAGTGAAGCTTCTCTCCTCCTCCCCTGACTCGCCGGTCCGGTACCAGAGTTTCAAGTGCTTCTCTGTCTCGGACCTCAAGAAGAAGGTGATGGCAGGGCTTTGTAAAAGTTGTGAAAAGGAAGGGCAATGGAGATACTTGGTTTTGGGTGAAGCATGCTGCCATTTAGGCCTAATGGAAGATGCAATGGTTCTTCTCCAAACAGGGAAACGCCTTGCCAGCGCGGCGTTTCGGCGAGAAAGCGTGTGTTGGTCCGATGACAGCTTTTCACTCTCCGGCATTCCTTTTGCCGGCGACGCCACAAACCCACCACCCACGTCTCCTCCCAAAGCCCCTCTCACGGATTCCACCGAGAGCGTCACCCAGCTCCTCACCCACATCAAGTTCCTCCTCCGCCGCCGTGCAGCCGCACTCGCTGCCCTTGATGCCGGCCTCTACCCGGAAGCCATCCGTCACTTCTCAAAAATTGTCGATGGCCGCCGCGCCGCCCCACAAGGGTTCCTAGCAGAATGCTACATGCACAGAGCCTCCGCGCACCGTTCCGCCGGTCGAATCGCAGAGTCCATCGCCGACTGCAACCGCACCTTAGCCCTCGACCCAACCTGCATCCAAGCCCTCGAAACCAGAGCATCACTCTTCGAAACAATTCGCTGCTTACCAGATTCTCTTCACGATCTTGAACACCTGAAGCTTCTCTACAACTCCATCCTGCGTGATCGCAAGCTTCCCGGCCCGGCGTGGAAGCGCCACAACGTGCGTTACAGGGAGATTCCGGGGAAACTCTGCACCCTCACCGCGAAGAGTCAAGAACTGAAACAGAGGCTGGCTTCAGGGGAGACTAGTAGCGTTGATTACTACGCTCTGATCGGAGTTCGACGTGGTTGTTCTCGATCGGAGTTGGAGAGGGCTCATCTCTTGCTGTGTCTCCGGCACAAGCCTGATAGAGCAACAAGCTTCATCGATAGGTGCGAGCTTGCAGATGAACGTGATGTTGATTCAGTGAAGGAGAGAGCGAAGATGTCTGCATTGTTGTTGTATAGGTTGGTTCAGAAGGGTTACACGAGCGTGATGGGTACAATATTGGATGAAGAAGCTGCTGAGAAACAGAGGAAGAAAGCTGCATTGCAAGCTGCTGCGGCGGCGAATCAAGTTAAGATCAAAGCAGTGGCGAGTCATGAACCTGAGATGAACAAGCCAGATAGTAGGAGCTGCAATGTTGTGGAAGACAAGTCTACATTGGTGTCTTCTTCCACTGTGAATCCGGCGGTGTTTCAGGGTGTTTTCTGCCGTGATCTTGCGGTGGTCGGAAACTTGCTTTCTCAGGCAAGGTTTAATCAGCCAATTCCGGTGAAGTATGAAGCATTGAGCTGCTGA 1719 0.5305 MAVTAHSLSATEKKHWWLTNRKIVEKYIKDARSLIATQEQSEIASALNLLDAALAISPRLDQALELRARSLLYLRRFKEVADMLQDYIPSLRMANEDPVSVSSSSDCSSQNLSREGVKLLSSSPDSPVRYQSFKCFSVSDLKKKVMAGLCKSCEKEGQWRYLVLGEACCHLGLMEDAMVLLQTGKRLASAAFRRESVCWSDDSFSLSGIPFAGDATNPPPTSPPKAPLTDSTESVTQLLTHIKFLLRRRAAALAALDAGLYPEAIRHFSKIVDGRRAAPQGFLAECYMHRASAHRSAGRIAESIADCNRTLALDPTCIQALETRASLFETIRCLPDSLHDLEHLKLLYNSILRDRKLPGPAWKRHNVRYREIPGKLCTLTAKSQELKQRLASGETSSVDYYALIGVRRGCSRSELERAHLLLCLRHKPDRATSFIDRCELADERDVDSVKERAKMSALLLYRLVQKGYTSVMGTILDEEAAEKQRKKAALQAAAAANQVKIKAVASHEPEMNKPDSRSCNVVEDKSTLVSSSTVNPAVFQGVFCRDLAVVGNLLSQARFNQPIPVKYEALSC* 573
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g0414 572 SMART dnaj_3 398 480 IPR001623 -
Lja1g0414 572 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN 1 572 - -
Lja1g0414 572 Coils Coil 478 498 - -
Lja1g0414 572 SUPERFAMILY Chaperone J-domain 395 433 IPR036869 -
Lja1g0414 572 SUPERFAMILY TPR-like 250 345 IPR011990 GO:0005515
Lja1g0414 572 PANTHER - 1 572 - -
Lja1g0414 572 SMART tpr_5 284 317 IPR019734 GO:0005515
Lja1g0414 572 CDD DnaJ 399 433 IPR001623 -
Lja1g0414 572 Gene3D Tetratricopeptide repeat domain 35 495 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g0414 Lja-Chr1 3631881 3634965 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g0414 - - gmx:100800231 879.396
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g0414 1 3631881 3634965 Lja1g0414 1 3631881 3634965 ECH
Lja1g0414 1 3631881 3634965 Lja5g1221 5 12203728 12206733 PCT