Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g1217 ATGGAAACCACCATGTGCTTCAACAATGGGATCGTTCCCTCGATCCCGATCGGCGGCTCTGTGGACGCACGCGCCAACCCTTCTCAGGTCAGCGCGATGGGGCGTTCAGCGGCGGAGAAACCGAAACCGCCGCAAAAGTCGTTGTTCTCGAGATTCTCGTTTAGGTATCCTTTAGAGTCTCTCTGGCCGCGGGGAGCTCGGGACGGCGGGTTTAGTGGGCTGGCCTTAGACGACGCTGTTTTGGTGGAGGACGGTGAAGAAGAGAAGGCTGAAAGAGATGATGAAAGGGAGGGTGGGAACTGGGTTTTGAAGATTTTGCATGTGAAGTCGGTGTGGAAGAGGGAACAGGGGAACGGTGGTGATGAGGAGAATCAAGGAGAAGGTACAGCCAACGATCACAGGAATGAGGATGAGGAGGTGTGTTGTGATGGTTGCATGGTTGATCAAGATGATGACGAAAAAGAAGAAGAAGAAGAAGAAGAAGATGTTCAGTTTGATAGAGACTCGTTTTCCAGAATGTTACGGAGGGTGTCTTTGGCTGAAGCTAGATTGTATGCGCAGATGTCACACTTGGGGAGCTTGGCCTACTCTATTCCCAAAATCAAGCCGGGGAAACTCTTAAAACATTATGGTCTGCGTCTTGTAACTTCATCAATAGAGAAGAAGGAATTGGCTGCAGCAGCTGAAAAAACTCCTCAGGAAGGTGAAACTAATGAGAAGGCAGAAGATGAGAATGAAACAAAGGAGGCGAAGAACGGTGGATCCAAGATAAGTGCATCTGCTGCTTACAACATTGCTGCCTCTGCTGCATCTTATCTTCATGCTCAGACTAGGAGCATACTCCCATTCAAATCTTCAACTGCTGCGGATGGTAAAGGTTCCCCTGAAGGAAGCAATGAAAGCCTTAGTGGTGTTAACATGTTAAACACAGAGTTCGGATCTTTGATGGCAACTACTGATTCAGTGACAGCAGTGGTTGCAGCAAAGGAGGAAGTAAAGCAGGCGGTTGCAGATGATCTAAACTCAATTCGTTCATCACCCTGCGAATGGTACATATGTGATGATGACCAGAATGGTACAAGGTTCTTTGTTATTCAGGGTTCTGAGTCAATGGCATCCTGGCAAGCAAACCTTCTTTTTGAGCCGGTTAAATTTGAGGGGTTGGATGTCCTTGTGCACAGAGGTATTTACGAGGCTGCTAAAGGGATATACCAACAGATGTTGCCAGAAGTTCATTCTCATCTAAGAGCAAAAGGTTCTCGTGCAACTTTCCGTTTCACAGGGCATTCTCTTGGTGGAAGCTTGGCGTTACTTGTAAATCTCATGCTCTTAATACGACAAGAAGTGTCAATCTCCTCTCTACTTCCGGTGATAACTTTTGGTTCCCCATCCATCATGTGTGGAGGTGATAGTCTCCTCGGCAAGCTAGGTCTACCACGGAGTCACCTTCAGGCAATTATGATGCACAGAGACATAGTACCACGAGCATTTTCCTGCAAATATCCTGACCACGTCGCAAGACTGTTAAAGGCTGTCAATGGGAACTTCCGTAACCATCCTTGTCTCAATAACCAAAAGTTACTATATGCACCAATGGGTGAACTGCTGATTCTACAGCCTGATAAGAAGTTTTCACCAAGCCATGACCTCCTGCCATCAGGCAGTGGTCTATATATCTTGTGTTGTCCTTTGTCAGAATCCAATGATGCAGAGAAGCTGCTCCGAGCCGCGCAGTTGGAGTTCTTGAACTCGCCTCATCCACTTGAGATATTAAGTGACCGATCTGCTTATGGATCTGAAGGATGCATACAAAGAGATCATGACATGAATTCCTACTTAATCTCCGTGAGAACCGTGATTCGCCAGGAACTTAACCAGATCCGTAAAGCAATGAGAGAACAGCGGCGGAAGGTGTGGTGGCCTCTGGTGTTGCCACGCGGAATCGATGCCAACATTGTTGTTGGTAGATCCATGGTGTCAGTCAATGTGGGTGGTCAACGCCAGTCCTCATTCTCTGGCATGATACAGATAGGAAGAGAGTCCTTGAAAAGGTTCAGCAGACTTGTTGCATCTCAACATATGCATTTGTTTGTGCTACTATTATTCCCTGCAAGGTTGTTACTTTTGGGGGCATATAACGTGATTAGCTTCAAATGA 2157 0.4692 METTMCFNNGIVPSIPIGGSVDARANPSQVSAMGRSAAEKPKPPQKSLFSRFSFRYPLESLWPRGARDGGFSGLALDDAVLVEDGEEEKAERDDEREGGNWVLKILHVKSVWKREQGNGGDEENQGEGTANDHRNEDEEVCCDGCMVDQDDDEKEEEEEEEDVQFDRDSFSRMLRRVSLAEARLYAQMSHLGSLAYSIPKIKPGKLLKHYGLRLVTSSIEKKELAAAAEKTPQEGETNEKAEDENETKEAKNGGSKISASAAYNIAASAASYLHAQTRSILPFKSSTAADGKGSPEGSNESLSGVNMLNTEFGSLMATTDSVTAVVAAKEEVKQAVADDLNSIRSSPCEWYICDDDQNGTRFFVIQGSESMASWQANLLFEPVKFEGLDVLVHRGIYEAAKGIYQQMLPEVHSHLRAKGSRATFRFTGHSLGGSLALLVNLMLLIRQEVSISSLLPVITFGSPSIMCGGDSLLGKLGLPRSHLQAIMMHRDIVPRAFSCKYPDHVARLLKAVNGNFRNHPCLNNQKLLYAPMGELLILQPDKKFSPSHDLLPSGSGLYILCCPLSESNDAEKLLRAAQLEFLNSPHPLEILSDRSAYGSEGCIQRDHDMNSYLISVRTVIRQELNQIRKAMREQRRKVWWPLVLPRGIDANIVVGRSMVSVNVGGQRQSSFSGMIQIGRESLKRFSRLVASQHMHLFVLLLFPARLLLLGAYNVISFK* 719
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g1217 718 MobiDBLite consensus disorder prediction 225 251 - -
Lja5g1217 718 Gene3D alpha/beta hydrolase 310 530 IPR029058 -
Lja5g1217 718 SUPERFAMILY alpha/beta-Hydrolases 346 537 IPR029058 -
Lja5g1217 718 PANTHER PHOSPHOLIPASE A1 PLIP2, CHLOROPLASTIC 31 715 IPR043367 GO:0008970
Lja5g1217 718 CDD Lipase_3 340 495 - -
Lja5g1217 718 Coils Coil 617 637 - -
Lja5g1217 718 MobiDBLite consensus disorder prediction 285 304 - -
Lja5g1217 718 Pfam Lipase (class 3) 363 499 IPR002921 GO:0006629
Lja5g1217 718 PANTHER PHOSPHOLIPASE A1 PLIP2, CHLOROPLASTIC 31 715 - -
Lja5g1217 718 MobiDBLite consensus disorder prediction 225 254 - -
Lja5g1217 718 MobiDBLite consensus disorder prediction 114 137 - -
Lja5g1217 718 MobiDBLite consensus disorder prediction 26 46 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g1217 Lja-Chr5 12161136 12164919 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g1217 4 718 Acyl Lipid Metabolism Gene Families AT1G02660 57.317 0.0 740
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g1217 - - gmx:100807834 1019.99
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g1217 5 12161136 12164919 Lja5g1217 5 12161136 12164919 ECH
Lja1g0413 1 3619628 3623018 Lja5g1217 5 12161136 12164919 PCT