Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g1190 ATGACTCTTGTTTTCTCCTTCACAACTCTGTTTCCCCTGTTTTCTCTTCTCTCTTCTGTTCTGCTTCACACTGGTGTGGATGCCTTCCCACTCCATCACAACCATCGCCACCCTCACTTTGCCACTCACAACTACAGAGATGCTCTCACCAAATCTATTCTCTACTTTGAAGGCCAGAGGTCAGGGAAGCTCCCTCCAAATCAGAGAATGTCTTGGAGAAGGGACTCTGGCCTCTCTGATGGCTCTGCCATGCATGTTGACTTGGTTGGAGGGTACTATGATGCAGGGGACAATGTCAAGTTTGGTTTTCCCATGGCTTTTACCACCACCATGCTTTCATGGAGTGTTATTGAGTTTGGTGGGTTGATGAAAGGTGAGTTGCAGACTGCAAGAGAAGCCATTCGCTGGTCTACTGATTATCTTCTCAAAGCTACTGTACATCCAGACACCATTTATGTTCAGGTAGGAGATGCAAAGAAGGATCATGCTTGCTGGGAGAGACCAGAAGACATGGACACTCCAAGAAGTGTCTTCAAGGTAGATGCAAATGCACCTGGTTCAGAAGTTGCAGCAGAAACTGCTGCAGCTCTTGCATCTGCTTCCATTGTCTTCAGAAGATGTGATCCTTCATACTCCAACACTTTGATCAGGAGGGCTATCAGGGTGTTCCAGTTTGCTGATAAACACAGGGGATCCTACAGCAATGCCTTGAAGCCCATTGTGTGCCCCTTTTATTGCTCTTACTCTGGATATGAGGATGAGCTATTGTGGGGTGCTGCTTGGCTGCACAAAGCTACCAAGAATCCAATGTACCTAAATTACATTCAAGTTAATGGCCAAATTCTTGGTGCTGCTGAGTTTGACAACACTTTTGGGTGGGACAACAAGCATGTTGGAGCAAGGATACTTCTTTCCAAGGAATTTCTTGTTCAGAAGGTACAGTCCCTCCATGATTACAAGGGTCATGCAGATAATTTCGTTTGCTCTCTGATTCCAGGAGCTTCTTCTGCCCAATACACCCCAGGGGGTCTTTTGTTCAAGATGAGTGATAGCAACATGCAGTATGTTACATCCACCACGTTCCTACTGTTAACATATGCCAAATACTTGACCTCATCCCACACTGTTGTGAACTGTGGTGGCATCACAGTAACCCCAAAGAAGCTCAGGACAATAGCCAAGAAACAGGTGGATTATTTGCTAGGAGATAACCCTTTGAAGATGTCCTACATGGTGGGGTATGGTCCAAGGTTCCCACAGAGGATCCACCACAGGGGCTCATCTCTGCCGTCCGTTGCTATGCACCCAGGGAAGATCCAATGCTCAGCAGGGTTCAGTGTGATGGATTCACAATCCCCTAACCCGAATGTTCTAGTGGGTGCGGTTGTTGGTGGGCCTGATCAGAATGATAGGTTCCCAGATGAACGGTCAGATTATGAGCAATCAGAGCCTGCTACTTACACCAATGCACCCCTTGTGGGAGCACTGGCTTATCTTGCACACTCATTTGGTCAACTCTAG 1521 0.4707 MTLVFSFTTLFPLFSLLSSVLLHTGVDAFPLHHNHRHPHFATHNYRDALTKSILYFEGQRSGKLPPNQRMSWRRDSGLSDGSAMHVDLVGGYYDAGDNVKFGFPMAFTTTMLSWSVIEFGGLMKGELQTAREAIRWSTDYLLKATVHPDTIYVQVGDAKKDHACWERPEDMDTPRSVFKVDANAPGSEVAAETAAALASASIVFRRCDPSYSNTLIRRAIRVFQFADKHRGSYSNALKPIVCPFYCSYSGYEDELLWGAAWLHKATKNPMYLNYIQVNGQILGAAEFDNTFGWDNKHVGARILLSKEFLVQKVQSLHDYKGHADNFVCSLIPGASSAQYTPGGLLFKMSDSNMQYVTSTTFLLLTYAKYLTSSHTVVNCGGITVTPKKLRTIAKKQVDYLLGDNPLKMSYMVGYGPRFPQRIHHRGSSLPSVAMHPGKIQCSAGFSVMDSQSPNPNVLVGAVVGGPDQNDRFPDERSDYEQSEPATYTNAPLVGALAYLAHSFGQL* 507
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g1190 506 SUPERFAMILY Six-hairpin glycosidases 42 504 IPR008928 GO:0005975
Lja5g1190 506 Pfam Glycosyl hydrolase family 9 45 496 IPR001701 GO:0004553|GO:0005975
Lja5g1190 506 PANTHER ENDO-1,4-BETA-GLUCANASE 13 506 - -
Lja5g1190 506 ProSitePatterns Glycosyl hydrolases family 9 (GH9) active site signature 2. 399 425 IPR018221 -
Lja5g1190 506 PANTHER ENDOGLUCANASE 17 13 506 - -
Lja5g1190 506 Gene3D - 41 502 IPR012341 GO:0005975
Lja5g1190 506 ProSitePatterns Glycosyl hydrolases family 9 (GH9) active site signature 3. 472 490 IPR033126 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g1190 Lja-Chr5 11935841 11943478 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g1190 1 502 Glycoside Hydrolase AT1G02800 75.494 0.0 778
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g1190 K01179 - gmx:100777718 897.501
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g1190 5 11935841 11943478 Lja5g1190 5 11935841 11943478 ECH
Lja1g0392 1 3444464 3447039 Lja5g1190 5 11935841 11943478 PCT