Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g0392 ATGTCTCTTTCTCTTTCTTTTTCTCTTCTTTTCCTTCTTCTCTCTGTTACAGCTTCTCTTCCCCATTCTCATTCCTTCTCAGCCCAACACCACCAACCTCACTTTGCCACCCACAACTACAGAGATGCTCTTACCAAATCCATCATCTTCTTTGAAGGCCAGAGGTCAGGGAAGCTCCCCTCTAACCAGAGGATGTCTTGGAGGAGGGACTCTGGTCTCTCCGATGGCTCTACCATGCATGTTGATTTGGTTGGAGGGTACTACGATGCAGGGGACAACATCAAGTTTGGCTTTCCCATGGCCTTCACCACCACCATGCTTTCTTGGAGTGTTCTTGAGTTCGGTGGGATGATGAAAGGTGAATTGCCGAATGCCAGAGAAGCGATTCGCTGGGCCACTGATTATCTTCTCAAAGCTACTGCATATCCAGACACCATTTATGTTCAGGTAGGGGATGCTAAGAAGGACCATGCTTGTTGGGAAAGACCTGAAGACATGGACACCCCAAGAAATGCCTACAAGATAGATAGGAACAACCCTGGTTCTGATGTAGCTGGGGAAACTGCTGCAGCTCTTGCAGCTGCTTCTCTAGCTTTCAGGAGAACTGACCCAGCATACTCCAAAATATTGGTTAGGAGGGCTATCAGGGTTTTCCAGTTTGCTGATAAGTACAGGGGATCCTACAGCAATGGCTTGAAGCCCATTGTTTGCCCCTTCTATTGTTCCTACTCTGGTTATCAGGATGAGCTGTTGTGGGGTGCTGCTTGGCTGCACAAGGCTACTAAGAACCCAAAGTACCTTAACTACATCAAGGTTAATGGACAGATCCTTGGAGCTGCAGAGTTTGACAACACATTTGGGTGGGATAACAAGCATGTTGGAGCAAGGATTCTGCTTTCCAAGGACTTTCTGGTTAAAAAGATGCAAACCCTTCATGACTACAAGGGTCATGCTGACAATTTTATCTGTTCTGTTATCCCTGGAGTCTCTTCCTCTTCATACACCCCAGGTGGTCTTCTTTTCAAGATGAGTGACACCAACATGCAGTATGTCACATCCACCTCCTTCCTCCTCGTAACCTATGCCAAATACTTGACCAAAGCTCACACAGTTGTGCATTGTGGCGGAACCACCATAACTCCAAAGATGCTTCGTTCTATAGCCAAAAAACAGGTGGATTACTTGCTAGGAGACAACCCTTTGAAGATGTCCTACATGGTGGGGTATGGTCCTAGGTTCCCACAAAGGATACACCACAGGGGCTCATCACTGCCGTCCATTGGCGTTCACCCTGGCAAGATCCAATGCTCAGAAGGATTCAGTGTGATGAACTCACAATCCCCAAACCCCAATGTTCTAGTGGGTGCTGTTGTTGGAGGGCCGGATCAGCATGACATGTTCCCTGATGAACGGTCAGATTATGAGCAATCAGAGCCAGCTACTTATATCAATGCACCTCTTGTGGGAGCACTGGCTTATCTTGCACACTCATTTGGCCAGCTCTAA 1506 0.4748 MSLSLSFSLLFLLLSVTASLPHSHSFSAQHHQPHFATHNYRDALTKSIIFFEGQRSGKLPSNQRMSWRRDSGLSDGSTMHVDLVGGYYDAGDNIKFGFPMAFTTTMLSWSVLEFGGMMKGELPNAREAIRWATDYLLKATAYPDTIYVQVGDAKKDHACWERPEDMDTPRNAYKIDRNNPGSDVAGETAAALAAASLAFRRTDPAYSKILVRRAIRVFQFADKYRGSYSNGLKPIVCPFYCSYSGYQDELLWGAAWLHKATKNPKYLNYIKVNGQILGAAEFDNTFGWDNKHVGARILLSKDFLVKKMQTLHDYKGHADNFICSVIPGVSSSSYTPGGLLFKMSDTNMQYVTSTSFLLVTYAKYLTKAHTVVHCGGTTITPKMLRSIAKKQVDYLLGDNPLKMSYMVGYGPRFPQRIHHRGSSLPSIGVHPGKIQCSEGFSVMNSQSPNPNVLVGAVVGGPDQHDMFPDERSDYEQSEPATYINAPLVGALAYLAHSFGQL* 502
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g0392 501 Pfam Glycosyl hydrolase family 9 40 491 IPR001701 GO:0004553|GO:0005975
Lja1g0392 501 PANTHER ENDOGLUCANASE 17 5 501 - -
Lja1g0392 501 PANTHER ENDO-1,4-BETA-GLUCANASE 5 501 - -
Lja1g0392 501 ProSitePatterns Glycosyl hydrolases family 9 (GH9) active site signature 2. 394 420 IPR018221 -
Lja1g0392 501 Gene3D - 36 497 IPR012341 GO:0005975
Lja1g0392 501 SUPERFAMILY Six-hairpin glycosidases 37 499 IPR008928 GO:0005975
Lja1g0392 501 ProSitePatterns Glycosyl hydrolases family 9 (GH9) active site signature 3. 467 485 IPR033126 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g0392 Lja-Chr1 3444464 3447039 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g0392 1 497 Glycoside Hydrolase AT1G02800 75.050 0.0 773
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g0392 K01179 - gmx:100793900 881.708
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g0392 1 3444464 3447039 Lja1g0392 1 3444464 3447039 ECH
Lja1g0392 1 3444464 3447039 Lja5g1190 5 11935841 11943478 PCT