Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g1182 ATGGATATCAATTCTCACGCAATTGCACGCGCCACCGTCTTCCTCCTCTTGATCTTCTTCTCAACCCCACCACCCGCCGCCGCAACCACCACCACCGCCTTAACAGCATACGACGTCCTTCAACAGTACGATTTCCCAGTCGGGCTTCTTCCTACAGGCGTCACTGGCTATGAATTGGACGCTGCCACCGGGAAATTCAAAGCGTACCTCAATGGCTCTTGCTCGTTCGCGATTGATTCTTACGAGCTGAAGTACAAGTCCACCATAACTGGTGTTATCAGGAAAGGCCAGATCACTGATTTGAAAGGGATTGAAGTGAAGGTGTTTTTTCTGTGGCTGGACATTGTCACGGTTACTCGTGATGAGGGTGAGCTTCAATTCTCTGTTGGAATCGCTTCTGCGAATTTTGCTGTTGATAACTTTGATGAGAGTCCAACTTGTGGATGTGGCTTTGATTGTGTTGATGGAATTCGGAAGTTTGTGAACAAGTCACATGGTTTTCTGCTATCATCATAG 516 0.4767 MDINSHAIARATVFLLLIFFSTPPPAAATTTTALTAYDVLQQYDFPVGLLPTGVTGYELDAATGKFKAYLNGSCSFAIDSYELKYKSTITGVIRKGQITDLKGIEVKVFFLWLDIVTVTRDEGELQFSVGIASANFAVDNFDESPTCGCGFDCVDGIRKFVNKSHGFLLSS* 172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g1182 171 Pfam Protein of unknown function, DUF538 36 141 IPR007493 -
Lja5g1182 171 Gene3D - 26 146 IPR036758 -
Lja5g1182 171 PANTHER T31J12.3 PROTEIN-RELATED 14 155 IPR007493 -
Lja5g1182 171 SUPERFAMILY At5g01610-like 11 153 IPR036758 -
Lja5g1182 171 PANTHER DUF538 FAMILY PROTEIN 14 155 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g1182 Lja-Chr5 11867965 11868780 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g1182 - - pvy:116119832 203.371
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g0384 1 3356984 3357816 Lja5g1182 5 11867965 11868780 PCT