Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g1180 ATGATGCCTGCGACCCTTCTCCTCCTTCTCCTCCTCTCGGTGCCGCTTCTCTCCTCCGCCTCCTCCGCCGCTGCACCGTCAGCATACGAGGCGCTAGCAGGTTTCAACTTCCCGGCGGGCCTTCTCCCCAAAGGAGTAACAGCCTACGAACTCGACGAATCCACCGGCAAATTCCGCGCAGATCTGAACGGTTCCTGCAGCTTCACCCTCGAGGGTTCATACCAGTTGAGCTACAATTCAACCATCACCGGCCGCATATCGGACAACAGGCTCACCGATCTGAGGGGAATCAGCGTCAAGGTCCTCTTTTTCTGGCTCAACATTCTCGAGGTGGTTCGGAGCTCCGATCAACTCGATTTCTCCGTCGGTATCTCCTCTGCATCTTTTCCCTTAGATAGCTTTTTCGTTTCCCCCATGTGTGGTTGTGGATTGGACTGCGATTTGATTCGAATTAGGAAATTCAAATCGGATAGAAACCCTTCTCTTTCCTCTTTCTAG 498 0.5321 MMPATLLLLLLLSVPLLSSASSAAAPSAYEALAGFNFPAGLLPKGVTAYELDESTGKFRADLNGSCSFTLEGSYQLSYNSTITGRISDNRLTDLRGISVKVLFFWLNILEVVRSSDQLDFSVGISSASFPLDSFFVSPMCGCGLDCDLIRIRKFKSDRNPSLSSF* 166
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g1180 165 PANTHER T31J12.3 PROTEIN-RELATED 6 164 IPR007493 -
Lja5g1180 165 SUPERFAMILY At5g01610-like 5 146 IPR036758 -
Lja5g1180 165 Pfam Protein of unknown function, DUF538 28 134 IPR007493 -
Lja5g1180 165 Gene3D - 14 140 IPR036758 -
Lja5g1180 165 PANTHER F22D16.19 PROTEIN 6 164 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g1180 Lja-Chr5 11851445 11852343 Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g1180 - - gmx:100808207 217.238
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g1180 5 11851445 11852343 Lja5g1180 5 11851445 11852343 ECH
Lja1g0384 1 3356984 3357816 Lja5g1180 5 11851445 11852343 ECH